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Q5LCG5 (Q5LCG5_BACFN) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 44. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Name:batB EMBL CAH08200.1
ORF Names:BF9343_2419 EMBL CAH08200.1
OrganismBacteroides fragilis (strain ATCC 25285 / NCTC 9343) [Complete proteome] [HAMAP] EMBL CAH08200.1
Taxonomic identifier272559 [NCBI]
Taxonomic lineageBacteriaBacteroidetesBacteroidiaBacteroidalesBacteroidaceaeBacteroides

Protein attributes

Sequence length341 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Ontologies

Keywords
   LigandCalcium PDB 4JDU
Metal-binding PDB 4JDU
   Technical term3D-structure PDB 4JDU
Complete proteome
Gene Ontology (GO)
   Molecular_functionmetal ion binding

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Metal binding971Calcium PDB 4JDU
Metal binding991Calcium PDB 4JDU
Metal binding1011Calcium PDB 4JDU
Metal binding1701Calcium PDB 4JDU
Metal binding1981Calcium PDB 4JDU

Sequences

Sequence LengthMass (Da)Tools
Q5LCG5 [UniParc].

Last modified June 21, 2005. Version 1.
Checksum: 3CE6FA92CA2B4F1D

FASTA34137,969
        10         20         30         40         50         60 
MFRFEEPAYL YLLLLLPLLA AFYLYSNYRK RKAIRKFGDP VLMAQLMPDV SKYRPDVKFW 

        70         80         90        100        110        120 
LLFTAIGLFA VLLARPQFGS KLETVKRKGV EVMIALDISN SMLAQDVQPS RLEKAKRLIS 

       130        140        150        160        170        180 
KLVDGMENDK VGMIVFAGDA FTQLPITSDY ISAKMFLESI SPSLISKQGT AIGAAINLAA 

       190        200        210        220        230        240 
RSFTPQEGVG RAIVVITDGE NHEGGAVEAA KEAAKKGIQV NVLGVGLPDG APIPIEGSND 

       250        260        270        280        290        300 
FRRDREGNVI VTRLNEAMCQ EIAKEGNGIY IRVDNSNSAQ KAINQEINKM AKSDVESKVY 

       310        320        330        340 
TDYNEQFQVI AWMILLLLLV EMLILDRKNP LFKNIRLFSN K 

« Hide

References

« Hide 'large scale' references
[1]"Extensive DNA inversions in the B. fragilis genome control variable gene expression."
Cerdeno-Tarraga A.-M., Patrick S., Crossman L.C., Blakely G., Abratt V., Lennard N., Poxton I., Duerden B., Harris B., Quail M.A., Barron A., Clark L., Corton C., Doggett J., Holden M.T.G., Larke N., Line A., Lord A. expand/collapse author list , Norbertczak H., Ormond D., Price C., Rabbinowitsch E., Woodward J., Barrell B.G., Parkhill J.
Science 307:1463-1465(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 25285 / NCTC 9343.
[2]"The crystal structure of an aerotolerance-related membrane protein from Bacteroides fragilis NCTC 9343 with multiple mutations to serines."
Fan Y., Tan K., Bigelow L., Bearden J., Joachimiak A.
Submitted (FEB-2013) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.47 ANGSTROMS) OF 85-296 IN COMPLEX WITH CALCIUM.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CR626927 Genomic DNA. Translation: CAH08200.1.
RefSeqYP_212124.1. NC_003228.3.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4JDUX-ray1.47A85-296[»]
ProteinModelPortalQ5LCG5.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING272559.BF2500.

Protocols and materials databases

DNASU3288979.
StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAH08200; CAH08200; BF9343_2419.
GeneID3288979.
KEGGbfs:BF2500.
PATRIC21041544. VBIBacFra29119_2506.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2304.
HOGENOMHOG000277368.
KOK07114.
OMAMFRFAHP.
OrthoDBEOG63587V.

Enzyme and pathway databases

BioCycBFRA272559:GKF0-2448-MONOMER.

Family and domain databases

Gene3D3.40.50.410. 1 hit.
InterProIPR024163. Aerotolerance_reg_N.
IPR002035. VWF_A.
[Graphical view]
PfamPF07584. BatA. 1 hit.
[Graphical view]
SMARTSM00327. VWA. 1 hit.
[Graphical view]
SUPFAMSSF53300. SSF53300. 1 hit.
PROSITEPS50234. VWFA. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ5LCG5_BACFN
AccessionPrimary (citable) accession number: Q5LCG5
Entry history
Integrated into UniProtKB/TrEMBL: June 21, 2005
Last sequence update: June 21, 2005
Last modified: June 11, 2014
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)