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Q5LC04 (Q5LC04_BACFN) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 47. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Diaminopimelate epimerase HAMAP MF_00197
Short name=DAP epimerase HAMAP MF_00197
EC=5.1.1.7 HAMAP MF_00197
Gene names
Name:dapF HAMAP MF_00197 EMBL CAH08364.1
Ordered Locus Names:BF2665
ORF Names:BF9343_2583 EMBL CAH08364.1
OrganismBacteroides fragilis (strain ATCC 25285 / NCTC 9343) [Complete proteome] [HAMAP] EMBL CAH08364.1
Taxonomic identifier272559 [NCBI]
Taxonomic lineageBacteria › Bacteroidetes › Bacteroidia › Bacteroidales › Bacteroidaceae › Bacteroides

Protein attributes

Sequence length272 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

LL-2,6-diaminoheptanedioate = meso-diaminoheptanedioate. HAMAP MF_00197 SAAS SAAS018510

Pathway

Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; DL-2,6-diaminopimelate from LL-2,6-diaminopimelate: step 1/1. HAMAP MF_00197 SAAS SAAS018510

Subcellular location

Cytoplasm By similarity HAMAP MF_00197 SAAS SAAS018510.

Sequence similarities

Belongs to the diaminopimelate epimerase family. HAMAP MF_00197

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site781 By similarity HAMAP MF_00197
Active site2131 By similarity HAMAP MF_00197

Sequences

Sequence LengthMass (Da)Tools
Q5LC04 [UniParc].

Last modified June 21, 2005. Version 1.
Checksum: F2B9A7F0F1E24ABD

FASTA27229,683
        10         20         30         40         50         60 
MIKMARAIQF TKMHGTGNDY IYVNTLRFPI ARPEKAAIEW SAYHTGIGSD GLVLIGHSDK 

        70         80         90        100        110        120 
ADFSMRIFNA DGSEAMMCGN ASRCIGKYLY EYGLTSKNVI TLDTLSGIKI LELHLEGRTV 

       130        140        150        160        170        180 
ETVTVDMGVP LETGTIDFDG EFPFLSTQVS MGNPHLVTFV DDIRIVNLSE MGPKLEKHPL 

       190        200        210        220        230        240 
FPDRTNVEFA QITGENTIRM RVWERGSGIT QACGTGACAT AVAAHLTGRT GRTVNVVMDG 

       250        260        270 
GTLTIEWDEA TGHISMTGPA VKVFDGTIEL RE

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References

[1]"Extensive DNA inversions in the B. fragilis genome control variable gene expression."
Cerdeno-Tarraga A.-M., Patrick S., Crossman L.C., Blakely G., Abratt V., Lennard N., Poxton I., Duerden B., Harris B., Quail M.A., Barron A., Clark L., Corton C., Doggett J., Holden M.T.G., Larke N., Line A., Lord A. expand/collapse author list , Norbertczak H., Ormond D., Price C., Rabbinowitsch E., Woodward J., Barrell B.G., Parkhill J.
Science 307:1463-1465(2005) [PubMed: 15746427] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CR626927 Genomic DNA. Translation: CAH08364.1.
RefSeqYP_212285.1. NC_003228.3.

3D structure databases

ProteinModelPortalQ5LC04.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ5LC04.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID3285407.
GenomeReviewsGene locus BF2665 in contig CR626927_GR.
KEGGbfs:BF2665.
PATRIC21041902. VBIBacFra29119_2678.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0253.
HOGENOMHBG399442.
OMAHIKHEED.
ProtClustDBPRK00450.

Family and domain databases

HAMAPMF_00197. DAP_epimerase.
[Tree]
InterProIPR018510. DAP_epimerase_AS.
IPR001653. DAP_epimerase_DapF.
[Graphical view]
KOK01778.
PfamPF01678. DAP_epimerase. 2 hits.
[Graphical view]
TIGRFAMsTIGR00652. DapF. 1 hit.
PROSITEPS01326. DAP_EPIMERASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ5LC04_BACFN
AccessionPrimary (citable) accession number: Q5LC04
Entry history
Integrated into UniProtKB/TrEMBL: June 21, 2005
Last sequence update: June 21, 2005
Last modified: December 14, 2011
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info