Q5L8B8 (RS17_BACFN) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
30S ribosomal protein S17

Gene names

Name:	rpsQ
Ordered Locus Names:	BF3994

Organism

Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) [Complete proteome] [HAMAP]

Taxonomic identifier

272559 [NCBI]

Taxonomic lineage

Bacteria › Bacteroidetes › Bacteroidia › Bacteroidales › Bacteroidaceae › Bacteroides

Protein attributes

Sequence length	89 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA By similarity. HAMAP MF_01345_B
Subunit structure	Part of the 30S ribosomal subunit.
Sequence similarities	Belongs to the ribosomal protein S17P family.

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: InterPro
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	rRNA binding Inferred from electronic annotation. Source: UniProtKB-KW structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 89	89	30S ribosomal protein S17 HAMAP MF_01345_B		PRO_0000233426

Sequences

	Sequence		Length	Mass (Da)
	Q5L8B8 [UniParc]. Last modified June 21, 2005. Version 1. Checksum: F33FD3975EE9355D	FASTA	89	10,472
	10 20 30 40 50 60 MISLMEARNL RKERTGVVLS NKMEKTITVA AKFKEKHPIY GKFVSKTKKY HAHDEKNECN 70 80 VGDTVRIMET RPLSKTKRWR LVEIIERAK

References

[1]

"Extensive DNA inversions in the B. fragilis genome control variable gene expression." Cerdeno-Tarraga A.-M., Patrick S., Crossman L.C., Blakely G., Abratt V., Lennard N., Poxton I., Duerden B., Harris B., Quail M.A., Barron A., Clark L., Corton C., Doggett J., Holden M.T.G., Larke N., Line A., Lord A. , Norbertczak H., Ormond D., Price C., Rabbinowitsch E., Woodward J., Barrell B.G., Parkhill J. Science 307:1463-1465(2005) [PubMed: 15746427] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 25285 / NCTC 9343.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CR626927 Genomic DNA. Translation: CAH09670.1.
RefSeq	YP_213573.1. NC_003228.3.
3D structure databases
ProteinModelPortal	Q5L8B8.
SMR	Q5L8B8. Positions 16-88.
ModBase	Search...
Protein-protein interaction databases
STRING	Q5L8B8.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3288148.
GenomeReviews	Gene locus BF3994 in contig CR626927_GR.
KEGG	bfs:BF3994.
PATRIC	21044792. VBIBacFra29119_4087.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0186.
HOGENOM	HBG750455.
OMA	TIRECRP.
ProtClustDB	PRK05610.
Enzyme and pathway databases
BioCyc	BFRA272559:BF3994-MONOMER.
Family and domain databases
HAMAP	MF_01345_B. Ribosomal_S17_B. [Tree]
InterPro	IPR012340. NA-bd_OB-fold. IPR016027. NA-bd_OB-fold-like. IPR000266. Ribosomal_S17. IPR019984. Ribosomal_S17_bac-type. IPR019979. Ribosomal_S17_CS. [Graphical view]
Gene3D	G3DSA:2.40.50.140. OB_NA_bd_sub. 1 hit.
KO	K02961.
PANTHER	PTHR10744. Ribosomal_S17. 1 hit.
Pfam	PF00366. Ribosomal_S17. 1 hit. [Graphical view]
PRINTS	PR00973. RIBOSOMALS17.
ProDom	PD001295. Ribosomal_S17. 1 hit. [Graphical view] [Entries sharing at least one domain]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR03635. S17_bact. 1 hit.
PROSITE	PS00056. RIBOSOMAL_S17. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RS17_BACFN

Accession

Primary (citable) accession number: Q5L8B8

Entry history

Integrated into UniProtKB/Swiss-Prot:	May 2, 2006
Last sequence update:	June 21, 2005
Last modified:	January 25, 2012
This is version 42 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program