SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Q5L3Y2

- PDXS_GEOKA

UniProt

Q5L3Y2 - PDXS_GEOKA

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Pyridoxal biosynthesis lyase PdxS
Gene
pdxS, GK0011
Organism
Geobacillus kaustophilus (strain HTA426)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at protein leveli

Functioni

Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring By similarity.UniRule annotation

Pathwayi

GO - Molecular functioni

  1. lyase activity Source: UniProtKB-KW

GO - Biological processi

  1. pyridoxal phosphate biosynthetic process Source: UniProtKB-UniPathway
Complete GO annotation...

Keywords - Molecular functioni

Lyase

Keywords - Ligandi

Pyridoxal phosphate

Enzyme and pathway databases

BioCyciGKAU235909:GJO7-16-MONOMER.
UniPathwayiUPA00245.

Names & Taxonomyi

Protein namesi
Recommended name:
Pyridoxal biosynthesis lyase PdxS (EC:4.-.-.-)
Gene namesi
Name:pdxS
Ordered Locus Names:GK0011
OrganismiGeobacillus kaustophilus (strain HTA426)
Taxonomic identifieri235909 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeGeobacillus
ProteomesiUP000001172: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 294294Pyridoxal biosynthesis lyase PdxSUniRule annotation
PRO_0000109395Add
BLAST

Interactioni

Subunit structurei

Forms a complex with PdxT By similarity.UniRule annotation

Protein-protein interaction databases

STRINGi235909.GK0011.

Structurei

Secondary structure

Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi20 – 278
Helixi28 – 3710
Beta strandi40 – 445
Helixi64 – 7310
Beta strandi78 – 836
Helixi87 – 9610
Beta strandi99 – 1046
Helixi118 – 1203
Beta strandi125 – 1317
Helixi132 – 1409
Beta strandi144 – 1485
Helixi158 – 17619
Helixi179 – 1813
Helixi182 – 1898
Helixi193 – 20210
Beta strandi206 – 2149
Helixi218 – 2269
Beta strandi230 – 2345
Helixi236 – 2405
Helixi244 – 25613
Turni257 – 2593
Helixi261 – 2677
Turni268 – 2703

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1ZNNX-ray2.20A/B/C/D/E/F1-294[»]
ProteinModelPortaliQ5L3Y2.
SMRiQ5L3Y2. Positions 18-271.

Miscellaneous databases

EvolutionaryTraceiQ5L3Y2.

Family & Domainsi

Sequence similaritiesi

Belongs to the PdxS/SNZ family.

Phylogenomic databases

eggNOGiCOG0214.
HOGENOMiHOG000227586.
KOiK06215.
OMAiDMLKGGV.
OrthoDBiEOG6W9XBJ.

Family and domain databases

Gene3Di3.20.20.70. 2 hits.
HAMAPiMF_01824. PdxS.
InterProiIPR013785. Aldolase_TIM.
IPR011060. RibuloseP-bd_barrel.
IPR001852. Snz1p/Sor1.
[Graphical view]
PfamiPF01680. SOR_SNZ. 1 hit.
[Graphical view]
PIRSFiPIRSF029271. Pdx1. 1 hit.
SUPFAMiSSF51366. SSF51366. 1 hit.
TIGRFAMsiTIGR00343. TIGR00343. 1 hit.
PROSITEiPS01235. PDXS_SNZ_1. 1 hit.
PS51129. PDXS_SNZ_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5L3Y2-1 [UniParc]FASTAAdd to Basket

« Hide

MALTGTDRVK RGMAEMQKGG VIMDVVNAEQ AKIAEAAGAV AVMALERVPA    50
DIRAAGGVAR MADPTVIEEV MNAVSIPVMA KVRIGHYVEA RVLEALGVDY 100
IDESEVLTPA DEEFHIDKRQ FTVPFVCGCR DLGEAARRIA EGASMLRTKG 150
EPGTGNIVEA VRHMRKVNAQ IRKVVNMSED ELVAEAKQLG APVEVLREIK 200
RLGRLPVVNF AAGGVATPAD AALMMHLGAD GVFVGSGIFK SENPEKYARA 250
IVEATTHYED YELIAHLSKG LGGAMRGIDI ATLLPEHRMQ ERGW 294
Length:294
Mass (Da):31,652
Last modified:February 1, 2005 - v1
Checksum:i3427A52A7DE63F50
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BA000043 Genomic DNA. Translation: BAD74296.1.
RefSeqiYP_145864.1. NC_006510.1.

Genome annotation databases

EnsemblBacteriaiBAD74296; BAD74296; GK0011.
GeneIDi3185318.
KEGGigka:GK0011.
PATRICi21961027. VBIGeoKau81518_0056.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BA000043 Genomic DNA. Translation: BAD74296.1 .
RefSeqi YP_145864.1. NC_006510.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1ZNN X-ray 2.20 A/B/C/D/E/F 1-294 [» ]
ProteinModelPortali Q5L3Y2.
SMRi Q5L3Y2. Positions 18-271.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 235909.GK0011.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAD74296 ; BAD74296 ; GK0011 .
GeneIDi 3185318.
KEGGi gka:GK0011.
PATRICi 21961027. VBIGeoKau81518_0056.

Phylogenomic databases

eggNOGi COG0214.
HOGENOMi HOG000227586.
KOi K06215.
OMAi DMLKGGV.
OrthoDBi EOG6W9XBJ.

Enzyme and pathway databases

UniPathwayi UPA00245 .
BioCyci GKAU235909:GJO7-16-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q5L3Y2.

Family and domain databases

Gene3Di 3.20.20.70. 2 hits.
HAMAPi MF_01824. PdxS.
InterProi IPR013785. Aldolase_TIM.
IPR011060. RibuloseP-bd_barrel.
IPR001852. Snz1p/Sor1.
[Graphical view ]
Pfami PF01680. SOR_SNZ. 1 hit.
[Graphical view ]
PIRSFi PIRSF029271. Pdx1. 1 hit.
SUPFAMi SSF51366. SSF51366. 1 hit.
TIGRFAMsi TIGR00343. TIGR00343. 1 hit.
PROSITEi PS01235. PDXS_SNZ_1. 1 hit.
PS51129. PDXS_SNZ_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Thermoadaptation trait revealed by the genome sequence of thermophilic Geobacillus kaustophilus."
    Takami H., Takaki Y., Chee G.-J., Nishi S., Shimamura S., Suzuki H., Matsui S., Uchiyama I.
    Nucleic Acids Res. 32:6292-6303(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HTA426.

Entry informationi

Entry nameiPDXS_GEOKA
AccessioniPrimary (citable) accession number: Q5L3Y2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 5, 2005
Last sequence update: February 1, 2005
Last modified: June 11, 2014
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi