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Q5L3Y2

- PDXS_GEOKA

UniProt

Q5L3Y2 - PDXS_GEOKA

Protein

Pyridoxal biosynthesis lyase PdxS

Gene

pdxS

Organism
Geobacillus kaustophilus (strain HTA426)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 69 (01 Oct 2014)
      Sequence version 1 (01 Feb 2005)
      Previous versions | rss
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    Functioni

    Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring.UniRule annotation

    Pathwayi

    GO - Molecular functioni

    1. lyase activity Source: UniProtKB-KW

    GO - Biological processi

    1. pyridoxal phosphate biosynthetic process Source: UniProtKB-UniPathway

    Keywords - Molecular functioni

    Lyase

    Keywords - Ligandi

    Pyridoxal phosphate

    Enzyme and pathway databases

    BioCyciGKAU235909:GJO7-16-MONOMER.
    UniPathwayiUPA00245.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Pyridoxal biosynthesis lyase PdxSUniRule annotation (EC:4.-.-.-UniRule annotation)
    Gene namesi
    Name:pdxSUniRule annotation
    Ordered Locus Names:GK0011
    OrganismiGeobacillus kaustophilus (strain HTA426)
    Taxonomic identifieri235909 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeGeobacillus
    ProteomesiUP000001172: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 294294Pyridoxal biosynthesis lyase PdxSPRO_0000109395Add
    BLAST

    Interactioni

    Subunit structurei

    Forms a complex with PdxT.UniRule annotation

    Protein-protein interaction databases

    STRINGi235909.GK0011.

    Structurei

    Secondary structure

    1
    294
    Legend: HelixTurnBeta strand
    Show more details
    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Beta strandi20 – 278
    Helixi28 – 3710
    Beta strandi40 – 445
    Helixi64 – 7310
    Beta strandi78 – 836
    Helixi87 – 9610
    Beta strandi99 – 1046
    Helixi118 – 1203
    Beta strandi125 – 1317
    Helixi132 – 1409
    Beta strandi144 – 1485
    Helixi158 – 17619
    Helixi179 – 1813
    Helixi182 – 1898
    Helixi193 – 20210
    Beta strandi206 – 2149
    Helixi218 – 2269
    Beta strandi230 – 2345
    Helixi236 – 2405
    Helixi244 – 25613
    Turni257 – 2593
    Helixi261 – 2677
    Turni268 – 2703

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1ZNNX-ray2.20A/B/C/D/E/F1-294[»]
    ProteinModelPortaliQ5L3Y2.
    SMRiQ5L3Y2. Positions 18-271.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ5L3Y2.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the PdxS/SNZ family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0214.
    HOGENOMiHOG000227586.
    KOiK06215.
    OMAiDMLKGGV.
    OrthoDBiEOG6W9XBJ.

    Family and domain databases

    Gene3Di3.20.20.70. 2 hits.
    HAMAPiMF_01824. PdxS.
    InterProiIPR013785. Aldolase_TIM.
    IPR011060. RibuloseP-bd_barrel.
    IPR001852. Snz1p/Sor1.
    [Graphical view]
    PfamiPF01680. SOR_SNZ. 1 hit.
    [Graphical view]
    PIRSFiPIRSF029271. Pdx1. 1 hit.
    SUPFAMiSSF51366. SSF51366. 1 hit.
    TIGRFAMsiTIGR00343. TIGR00343. 1 hit.
    PROSITEiPS01235. PDXS_SNZ_1. 1 hit.
    PS51129. PDXS_SNZ_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q5L3Y2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MALTGTDRVK RGMAEMQKGG VIMDVVNAEQ AKIAEAAGAV AVMALERVPA    50
    DIRAAGGVAR MADPTVIEEV MNAVSIPVMA KVRIGHYVEA RVLEALGVDY 100
    IDESEVLTPA DEEFHIDKRQ FTVPFVCGCR DLGEAARRIA EGASMLRTKG 150
    EPGTGNIVEA VRHMRKVNAQ IRKVVNMSED ELVAEAKQLG APVEVLREIK 200
    RLGRLPVVNF AAGGVATPAD AALMMHLGAD GVFVGSGIFK SENPEKYARA 250
    IVEATTHYED YELIAHLSKG LGGAMRGIDI ATLLPEHRMQ ERGW 294
    Length:294
    Mass (Da):31,652
    Last modified:February 1, 2005 - v1
    Checksum:i3427A52A7DE63F50
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000043 Genomic DNA. Translation: BAD74296.1.
    RefSeqiYP_145864.1. NC_006510.1.

    Genome annotation databases

    EnsemblBacteriaiBAD74296; BAD74296; GK0011.
    GeneIDi3185318.
    KEGGigka:GK0011.
    PATRICi21961027. VBIGeoKau81518_0056.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000043 Genomic DNA. Translation: BAD74296.1 .
    RefSeqi YP_145864.1. NC_006510.1.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1ZNN X-ray 2.20 A/B/C/D/E/F 1-294 [» ]
    ProteinModelPortali Q5L3Y2.
    SMRi Q5L3Y2. Positions 18-271.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 235909.GK0011.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAD74296 ; BAD74296 ; GK0011 .
    GeneIDi 3185318.
    KEGGi gka:GK0011.
    PATRICi 21961027. VBIGeoKau81518_0056.

    Phylogenomic databases

    eggNOGi COG0214.
    HOGENOMi HOG000227586.
    KOi K06215.
    OMAi DMLKGGV.
    OrthoDBi EOG6W9XBJ.

    Enzyme and pathway databases

    UniPathwayi UPA00245 .
    BioCyci GKAU235909:GJO7-16-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei Q5L3Y2.

    Family and domain databases

    Gene3Di 3.20.20.70. 2 hits.
    HAMAPi MF_01824. PdxS.
    InterProi IPR013785. Aldolase_TIM.
    IPR011060. RibuloseP-bd_barrel.
    IPR001852. Snz1p/Sor1.
    [Graphical view ]
    Pfami PF01680. SOR_SNZ. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF029271. Pdx1. 1 hit.
    SUPFAMi SSF51366. SSF51366. 1 hit.
    TIGRFAMsi TIGR00343. TIGR00343. 1 hit.
    PROSITEi PS01235. PDXS_SNZ_1. 1 hit.
    PS51129. PDXS_SNZ_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Thermoadaptation trait revealed by the genome sequence of thermophilic Geobacillus kaustophilus."
      Takami H., Takaki Y., Chee G.-J., Nishi S., Shimamura S., Suzuki H., Matsui S., Uchiyama I.
      Nucleic Acids Res. 32:6292-6303(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: HTA426.

    Entry informationi

    Entry nameiPDXS_GEOKA
    AccessioniPrimary (citable) accession number: Q5L3Y2
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: July 5, 2005
    Last sequence update: February 1, 2005
    Last modified: October 1, 2014
    This is version 69 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    3D-structure, Complete proteome, Reference proteome

    Documents

    1. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    2. PDB cross-references
      Index of Protein Data Bank (PDB) cross-references
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3