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Q5L3Y2

- PDXS_GEOKA

UniProt

Q5L3Y2 - PDXS_GEOKA

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Protein

Pyridoxal biosynthesis lyase PdxS

Gene

pdxS

Organism
Geobacillus kaustophilus (strain HTA426)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at protein leveli

Functioni

Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring.UniRule annotation

Pathwayi

GO - Molecular functioni

  1. lyase activity Source: UniProtKB-KW

GO - Biological processi

  1. pyridoxal phosphate biosynthetic process Source: UniProtKB-UniPathway
Complete GO annotation...

Keywords - Molecular functioni

Lyase

Keywords - Ligandi

Pyridoxal phosphate

Enzyme and pathway databases

BioCyciGKAU235909:GJO7-16-MONOMER.
UniPathwayiUPA00245.

Names & Taxonomyi

Protein namesi
Recommended name:
Pyridoxal biosynthesis lyase PdxSUniRule annotation (EC:4.-.-.-UniRule annotation)
Gene namesi
Name:pdxSUniRule annotation
Ordered Locus Names:GK0011
OrganismiGeobacillus kaustophilus (strain HTA426)
Taxonomic identifieri235909 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeGeobacillus
ProteomesiUP000001172: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 294294Pyridoxal biosynthesis lyase PdxSPRO_0000109395Add
BLAST

Interactioni

Subunit structurei

Forms a complex with PdxT.UniRule annotation

Protein-protein interaction databases

STRINGi235909.GK0011.

Structurei

Secondary structure

1
294
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi20 – 278Combined sources
Helixi28 – 3710Combined sources
Beta strandi40 – 445Combined sources
Helixi64 – 7310Combined sources
Beta strandi78 – 836Combined sources
Helixi87 – 9610Combined sources
Beta strandi99 – 1046Combined sources
Helixi118 – 1203Combined sources
Beta strandi125 – 1317Combined sources
Helixi132 – 1409Combined sources
Beta strandi144 – 1485Combined sources
Helixi158 – 17619Combined sources
Helixi179 – 1813Combined sources
Helixi182 – 1898Combined sources
Helixi193 – 20210Combined sources
Beta strandi206 – 2149Combined sources
Helixi218 – 2269Combined sources
Beta strandi230 – 2345Combined sources
Helixi236 – 2405Combined sources
Helixi244 – 25613Combined sources
Turni257 – 2593Combined sources
Helixi261 – 2677Combined sources
Turni268 – 2703Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1ZNNX-ray2.20A/B/C/D/E/F1-294[»]
ProteinModelPortaliQ5L3Y2.
SMRiQ5L3Y2. Positions 18-271.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5L3Y2.

Family & Domainsi

Sequence similaritiesi

Belongs to the PdxS/SNZ family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0214.
HOGENOMiHOG000227586.
KOiK06215.
OMAiDMLKGGV.
OrthoDBiEOG6W9XBJ.

Family and domain databases

Gene3Di3.20.20.70. 2 hits.
HAMAPiMF_01824. PdxS.
InterProiIPR013785. Aldolase_TIM.
IPR011060. RibuloseP-bd_barrel.
IPR001852. Snz1p/Sor1.
[Graphical view]
PfamiPF01680. SOR_SNZ. 1 hit.
[Graphical view]
PIRSFiPIRSF029271. Pdx1. 1 hit.
SUPFAMiSSF51366. SSF51366. 1 hit.
TIGRFAMsiTIGR00343. TIGR00343. 1 hit.
PROSITEiPS01235. PDXS_SNZ_1. 1 hit.
PS51129. PDXS_SNZ_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5L3Y2-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MALTGTDRVK RGMAEMQKGG VIMDVVNAEQ AKIAEAAGAV AVMALERVPA
60 70 80 90 100
DIRAAGGVAR MADPTVIEEV MNAVSIPVMA KVRIGHYVEA RVLEALGVDY
110 120 130 140 150
IDESEVLTPA DEEFHIDKRQ FTVPFVCGCR DLGEAARRIA EGASMLRTKG
160 170 180 190 200
EPGTGNIVEA VRHMRKVNAQ IRKVVNMSED ELVAEAKQLG APVEVLREIK
210 220 230 240 250
RLGRLPVVNF AAGGVATPAD AALMMHLGAD GVFVGSGIFK SENPEKYARA
260 270 280 290
IVEATTHYED YELIAHLSKG LGGAMRGIDI ATLLPEHRMQ ERGW
Length:294
Mass (Da):31,652
Last modified:February 1, 2005 - v1
Checksum:i3427A52A7DE63F50
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000043 Genomic DNA. Translation: BAD74296.1.
RefSeqiYP_145864.1. NC_006510.1.

Genome annotation databases

EnsemblBacteriaiBAD74296; BAD74296; GK0011.
GeneIDi3185318.
KEGGigka:GK0011.
PATRICi21961027. VBIGeoKau81518_0056.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000043 Genomic DNA. Translation: BAD74296.1 .
RefSeqi YP_145864.1. NC_006510.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1ZNN X-ray 2.20 A/B/C/D/E/F 1-294 [» ]
ProteinModelPortali Q5L3Y2.
SMRi Q5L3Y2. Positions 18-271.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 235909.GK0011.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAD74296 ; BAD74296 ; GK0011 .
GeneIDi 3185318.
KEGGi gka:GK0011.
PATRICi 21961027. VBIGeoKau81518_0056.

Phylogenomic databases

eggNOGi COG0214.
HOGENOMi HOG000227586.
KOi K06215.
OMAi DMLKGGV.
OrthoDBi EOG6W9XBJ.

Enzyme and pathway databases

UniPathwayi UPA00245 .
BioCyci GKAU235909:GJO7-16-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q5L3Y2.

Family and domain databases

Gene3Di 3.20.20.70. 2 hits.
HAMAPi MF_01824. PdxS.
InterProi IPR013785. Aldolase_TIM.
IPR011060. RibuloseP-bd_barrel.
IPR001852. Snz1p/Sor1.
[Graphical view ]
Pfami PF01680. SOR_SNZ. 1 hit.
[Graphical view ]
PIRSFi PIRSF029271. Pdx1. 1 hit.
SUPFAMi SSF51366. SSF51366. 1 hit.
TIGRFAMsi TIGR00343. TIGR00343. 1 hit.
PROSITEi PS01235. PDXS_SNZ_1. 1 hit.
PS51129. PDXS_SNZ_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Thermoadaptation trait revealed by the genome sequence of thermophilic Geobacillus kaustophilus."
    Takami H., Takaki Y., Chee G.-J., Nishi S., Shimamura S., Suzuki H., Matsui S., Uchiyama I.
    Nucleic Acids Res. 32:6292-6303(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HTA426.

Entry informationi

Entry nameiPDXS_GEOKA
AccessioniPrimary (citable) accession number: Q5L3Y2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 5, 2005
Last sequence update: February 1, 2005
Last modified: November 26, 2014
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3