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Q5L3Y2 (PDXS_GEOKA) Reviewed, UniProtKB/Swiss-Prot

Last modified June 11, 2014. Version 68. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Pyridoxal biosynthesis lyase PdxS

EC=4.-.-.-
Gene names
Name:pdxS
Ordered Locus Names:GK0011
OrganismGeobacillus kaustophilus (strain HTA426) [Complete proteome] [HAMAP]
Taxonomic identifier235909 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliBacillalesBacillaceaeGeobacillus

Protein attributes

Sequence length294 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring By similarity. HAMAP-Rule MF_01824

Pathway

Cofactor biosynthesis; pyridoxal 5'-phosphate biosynthesis. HAMAP-Rule MF_01824

Subunit structure

Forms a complex with PdxT By similarity. HAMAP-Rule MF_01824

Sequence similarities

Belongs to the PdxS/SNZ family.

Ontologies

Keywords
   LigandPyridoxal phosphate
   Molecular functionLyase
   Technical term3D-structure
Complete proteome
Gene Ontology (GO)
   Biological_processpyridoxal phosphate biosynthetic process

Inferred from electronic annotation. Source: UniProtKB-UniPathway

   Molecular_functionlyase activity

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 294294Pyridoxal biosynthesis lyase PdxS HAMAP-Rule MF_01824
PRO_0000109395

Secondary structure

.......................................... 294
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
Q5L3Y2 [UniParc].

Last modified February 1, 2005. Version 1.
Checksum: 3427A52A7DE63F50

FASTA29431,652
        10         20         30         40         50         60 
MALTGTDRVK RGMAEMQKGG VIMDVVNAEQ AKIAEAAGAV AVMALERVPA DIRAAGGVAR 

        70         80         90        100        110        120 
MADPTVIEEV MNAVSIPVMA KVRIGHYVEA RVLEALGVDY IDESEVLTPA DEEFHIDKRQ 

       130        140        150        160        170        180 
FTVPFVCGCR DLGEAARRIA EGASMLRTKG EPGTGNIVEA VRHMRKVNAQ IRKVVNMSED 

       190        200        210        220        230        240 
ELVAEAKQLG APVEVLREIK RLGRLPVVNF AAGGVATPAD AALMMHLGAD GVFVGSGIFK 

       250        260        270        280        290 
SENPEKYARA IVEATTHYED YELIAHLSKG LGGAMRGIDI ATLLPEHRMQ ERGW 

« Hide

References

[1]"Thermoadaptation trait revealed by the genome sequence of thermophilic Geobacillus kaustophilus."
Takami H., Takaki Y., Chee G.-J., Nishi S., Shimamura S., Suzuki H., Matsui S., Uchiyama I.
Nucleic Acids Res. 32:6292-6303(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HTA426.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BA000043 Genomic DNA. Translation: BAD74296.1.
RefSeqYP_145864.1. NC_006510.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1ZNNX-ray2.20A/B/C/D/E/F1-294[»]
ProteinModelPortalQ5L3Y2.
SMRQ5L3Y2. Positions 18-271.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING235909.GK0011.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAD74296; BAD74296; GK0011.
GeneID3185318.
KEGGgka:GK0011.
PATRIC21961027. VBIGeoKau81518_0056.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0214.
HOGENOMHOG000227586.
KOK06215.
OMADMLKGGV.
OrthoDBEOG6W9XBJ.

Enzyme and pathway databases

BioCycGKAU235909:GJO7-16-MONOMER.
UniPathwayUPA00245.

Family and domain databases

Gene3D3.20.20.70. 2 hits.
HAMAPMF_01824. PdxS.
InterProIPR013785. Aldolase_TIM.
IPR011060. RibuloseP-bd_barrel.
IPR001852. Snz1p/Sor1.
[Graphical view]
PfamPF01680. SOR_SNZ. 1 hit.
[Graphical view]
PIRSFPIRSF029271. Pdx1. 1 hit.
SUPFAMSSF51366. SSF51366. 1 hit.
TIGRFAMsTIGR00343. TIGR00343. 1 hit.
PROSITEPS01235. PDXS_SNZ_1. 1 hit.
PS51129. PDXS_SNZ_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceQ5L3Y2.

Entry information

Entry namePDXS_GEOKA
AccessionPrimary (citable) accession number: Q5L3Y2
Entry history
Integrated into UniProtKB/Swiss-Prot: July 5, 2005
Last sequence update: February 1, 2005
Last modified: June 11, 2014
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

PATHWAY comments

Index of metabolic and biosynthesis pathways