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Protein

UPF0342 protein GK0640

Gene

GK0640

Organism
Geobacillus kaustophilus (strain HTA426)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Enzyme and pathway databases

BioCyciGKAU235909:GJO7-715-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0342 protein GK0640UniRule annotation
Gene namesi
Ordered Locus Names:GK0640
OrganismiGeobacillus kaustophilus (strain HTA426)
Taxonomic identifieri235909 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeGeobacillus
Proteomesi
  • UP000001172 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 119119UPF0342 protein GK0640PRO_0000109975Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi235909.GK0640.

Structurei

Secondary structure

1
119
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi6 – 1813Combined sources
Helixi20 – 3314Combined sources
Helixi38 – 5720Combined sources
Helixi64 – 7714Combined sources
Helixi81 – 11333Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2OEQX-ray2.90A/B/C/D1-119[»]
ProteinModelPortaliQ5L2A5.
SMRiQ5L2A5. Positions 2-118.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5L2A5.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0342 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105WZB. Bacteria.
COG3679. LUCA.
HOGENOMiHOG000284933.
OMAiHEKQMRG.
OrthoDBiPOG091H02A8.

Family and domain databases

Gene3Di1.20.1500.10. 1 hit.
HAMAPiMF_01526. UPF0342. 1 hit.
InterProiIPR010368. Com_YlbF.
IPR023378. YheA/YmcA-like_dom.
[Graphical view]
PfamiPF06133. Com_YlbF. 1 hit.
[Graphical view]
SUPFAMiSSF158622. SSF158622. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5L2A5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSEPLHALAK QLEQAIRASE PFQQLKRAYE DVRRDETAYR MFANVRDIQL
60 70 80 90 100
QLHEKQMRGA AILPDEIEQA QKAMALAQQN EKLARLMALE QQMSMTIAEV
110
QQIAMKPLEE LHRSFMEGR
Length:119
Mass (Da):13,836
Last modified:February 1, 2005 - v1
Checksum:i9F0CB888F4A72A5D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000043 Genomic DNA. Translation: BAD74925.1.
RefSeqiWP_011230144.1. NC_006510.1.

Genome annotation databases

EnsemblBacteriaiBAD74925; BAD74925; GK0640.
GeneIDi3185911.
KEGGigka:GK0640.
PATRICi21962487. VBIGeoKau81518_0715.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000043 Genomic DNA. Translation: BAD74925.1.
RefSeqiWP_011230144.1. NC_006510.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2OEQX-ray2.90A/B/C/D1-119[»]
ProteinModelPortaliQ5L2A5.
SMRiQ5L2A5. Positions 2-118.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi235909.GK0640.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAD74925; BAD74925; GK0640.
GeneIDi3185911.
KEGGigka:GK0640.
PATRICi21962487. VBIGeoKau81518_0715.

Phylogenomic databases

eggNOGiENOG4105WZB. Bacteria.
COG3679. LUCA.
HOGENOMiHOG000284933.
OMAiHEKQMRG.
OrthoDBiPOG091H02A8.

Enzyme and pathway databases

BioCyciGKAU235909:GJO7-715-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ5L2A5.

Family and domain databases

Gene3Di1.20.1500.10. 1 hit.
HAMAPiMF_01526. UPF0342. 1 hit.
InterProiIPR010368. Com_YlbF.
IPR023378. YheA/YmcA-like_dom.
[Graphical view]
PfamiPF06133. Com_YlbF. 1 hit.
[Graphical view]
SUPFAMiSSF158622. SSF158622. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiY640_GEOKA
AccessioniPrimary (citable) accession number: Q5L2A5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 12, 2005
Last sequence update: February 1, 2005
Last modified: September 7, 2016
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.