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Protein

Purine nucleoside phosphorylase DeoD-type

Gene

deoD

Organism
Geobacillus kaustophilus (strain HTA426)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalytic activityi

Purine nucleoside + phosphate = purine + alpha-D-ribose 1-phosphate.UniRule annotation
Purine deoxynucleoside + phosphate = purine + 2'-deoxy-alpha-D-ribose 1-phosphate.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei4Purine nucleoside; shared with dimeric partnerBy similarity1
Binding sitei20Phosphate; via amide nitrogenBy similarity1
Binding sitei24PhosphateBy similarity1
Binding sitei43Phosphate; shared with dimeric partnerBy similarity1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionGlycosyltransferase, Transferase

Names & Taxonomyi

Protein namesi
Recommended name:
Purine nucleoside phosphorylase DeoD-typeUniRule annotation (EC:2.4.2.1UniRule annotation)
Short name:
PNPUniRule annotation
Gene namesi
Name:deoDUniRule annotation
Ordered Locus Names:GK1580
OrganismiGeobacillus kaustophilus (strain HTA426)
Taxonomic identifieri235909 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeGeobacillusGeobacillus thermoleovorans group
Proteomesi
  • UP000001172 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000631331 – 236Purine nucleoside phosphorylase DeoD-typeAdd BLAST236

Proteomic databases

PRIDEiQ5KZM1

Interactioni

Subunit structurei

Homohexamer.UniRule annotation

Protein-protein interaction databases

STRINGi235909.GK1580

Structurei

3D structure databases

ProteinModelPortaliQ5KZM1
SMRiQ5KZM1
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni87 – 90Phosphate bindingBy similarity4
Regioni178 – 180Purine nucleoside bindingBy similarity3
Regioni202 – 203Purine nucleoside bindingBy similarity2

Sequence similaritiesi

Belongs to the PNP/UDP phosphorylase family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105D3A Bacteria
COG0813 LUCA
HOGENOMiHOG000274896
KOiK03784
OMAiPQCLLCG
OrthoDBiPOG091H02M1

Family and domain databases

HAMAPiMF_01627 Pur_nucleosid_phosp, 1 hit
InterProiView protein in InterPro
IPR004402 DeoD-type
IPR018016 Nucleoside_phosphorylase_CS
IPR000845 Nucleoside_phosphorylase_d
IPR035994 Nucleoside_phosphorylase_sf
PANTHERiPTHR43691:SF2 PTHR43691:SF2, 1 hit
PfamiView protein in Pfam
PF01048 PNP_UDP_1, 1 hit
SUPFAMiSSF53167 SSF53167, 1 hit
TIGRFAMsiTIGR00107 deoD, 1 hit
PROSITEiView protein in PROSITE
PS01232 PNP_UDP_1, 1 hit

Sequencei

Sequence statusi: Complete.

Q5KZM1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSVHIGAKTG EIAERILLPG DPLRAKYIAE TFLEGAVCYN EVRGMLGFTG
60 70 80 90 100
TYKGERISVQ GTGMGVPSIS IYVNELIQSY GVKTLIRVGT CGAIQPDVRV
110 120 130 140 150
RDVILAMSAS TDSNMNRLIF RGRDYAPTAD FHLLRTAYEV GVEKGLALKV
160 170 180 190 200
GNVFTADMFY NDEPNWETWA RYGVLAVEME TAALYTLAAK FGCRALSVLT
210 220 230
VSDHILTGEE TTAEERQMTF NEMIEVALEA AIRNGA
Length:236
Mass (Da):25,849
Last modified:February 1, 2005 - v1
Checksum:iA8794197656AE477
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000043 Genomic DNA Translation: BAD75865.1
RefSeqiWP_011231075.1, NC_006510.1

Genome annotation databases

EnsemblBacteriaiBAD75865; BAD75865; GK1580
GeneIDi32063486
KEGGigka:GK1580
PATRICifig|235909.7.peg.1701

Similar proteinsi

Entry informationi

Entry nameiDEOD_GEOKA
AccessioniPrimary (citable) accession number: Q5KZM1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 10, 2006
Last sequence update: February 1, 2005
Last modified: May 23, 2018
This is version 81 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
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