Q5K548 (Q5K548_DANRE) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
BHLH transcription factor 3 EMBL CAD32563.1

Submitted name:
Olig3 protein EMBL AAH92917.1
Submitted name:
Oligodendrocyte transcription factor 3 EMBL CAM12912.1
Submitted name:
Oligodendrocyte transcription factor 4 Ensembl ENSDARP00000068987 EMBL CAM91227.1

Gene names

Name:	olig4 Ensembl ENSDARP00000068987 ZFIN ZDB-GENE-030131-3580 EMBL CAM91227.1
Synonyms:	olig3 ZFIN ZDB-GENE-030131-3580 EMBL CAD32563.1
ORF Names:	CH211-51N3.3-001 EMBL CAM12912.1

Organism

Danio rerio (Zebrafish) (Brachydanio rerio) EMBL CAD32563.1

Taxonomic identifier

7955 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Actinopterygii › Neopterygii › Teleostei › Ostariophysi › Cypriniformes › Cyprinidae › Danio

Protein attributes

Sequence length	244 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Sequence similarities

Contains 1 basic helix-loop-helix (bHLH) domain. RuleBase RU000367

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	regulation of neuron differentiation Inferred from mutant phenotype. Source: ZFIN
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q5K548 [UniParc]. Last modified February 15, 2005. Version 1. Checksum: 9069A58B4EF575A2	FASTA	244	26,220
	10 20 30 40 50 60 MDSDASSTCS RSSSPDLTVD SGFFSNKMFQ AYGETVQQKS EKGLQNAGKT RTRADLSKDD 70 80 90 100 110 120 LQDLRLKVNS RERKRMHDLN QAMDGLREVM PYAQGPSVRK LSKISTLLLA RNYILMLSSS 130 140 150 160 170 180 LEEMKKLVGD VYGANAQSHS ARRVLPPTSA APATQLPLLS LAPSLHPLVG STSAVSHTTT 190 200 210 220 230 240 NGAQTPHSPP STGYLGFPAL PTLLKDPLHL SGGYRHFPGM PCPCSLCQPL PASTASLHSL SMGK

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The olig family: phylogenetic analysis and early gene expression in Xenopus tropicalis." Bronchain O.J., Pollet N., Ymlahi-Ouazzani Q., Dhorne-Pollet S., Helbling J.C., Lecarpentier J.E., Percheron K., Wegnez M. Dev. Genes Evol. 217:485-497(2007) [PubMed: 17554554] [Abstract] Cited for: NUCLEOTIDE SEQUENCE.
[2]	"The basic helix-loop-helix olig3 establishes the neural plate boundary of the trunk and is necessary for development of the dorsal spinal cord." Filippi A., Tiso N., Deflorian G., Zecchin E., Bortolussi M., Argenton F. Proc. Natl. Acad. Sci. U.S.A. 102:4377-4382(2005) Cited for: NUCLEOTIDE SEQUENCE. Tissue: Embryo EMBL CAD32563.1.
[3]	Collins J. Submitted (JAN-2009) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE.
[4]	NIH - Zebrafish Gene Collection (ZGC) project Submitted (APR-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: Singapore local strain EMBL AAH92917.1. Tissue: Embryo EMBL AAH92917.1.
[5]	"The genomic sequence of Danio rerio." The Danio rerio Sequencing Project at the Sanger Institute Submitted (JUL-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Tuebingen Ensembl ENSDARP00000068987.
[6]	Ensembl Submitted (JUL-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: Tuebingen Ensembl ENSDARP00000068987.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BC092917 mRNA. Translation: AAH92917.1. AJ488293 mRNA. Translation: CAD32563.1. BX936305 Genomic DNA. Translation: CAM12912.1. BN001115 mRNA. Translation: CAM91227.1.
IPI	IPI00497718.
RefSeq	NP_955808.1. NM_199514.1.
UniGene	Dr.117660.
3D structure databases
ProteinModelPortal	Q5K548.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSDART00000074499; ENSDARP00000068987; ENSDARG00000052610.
GeneID	324857.
KEGG	dre:324857.
Organism-specific databases
CTD	324857.
ZFIN	ZDB-GENE-030131-3580. olig4.
Phylogenomic databases
eggNOG	fiNOG06540.
GeneTree	ENSGT00530000063239.
HOGENOM	HBG444019.
HOVERGEN	HBG053370.
InParanoid	Q5K548.
OMA	KLVGDVY.
OrthoDB	EOG4QC16J.
PhylomeDB	Q5K548.
Gene expression databases
Bgee	Q5K548.
Family and domain databases
InterPro	IPR011598. HLH_DNA-bd. [Graphical view]
Gene3D	G3DSA:4.10.280.10. HLH_DNA_bd. 1 hit.
Pfam	PF00010. HLH. 1 hit. [Graphical view]
SMART	SM00353. HLH. 1 hit. [Graphical view]
SUPFAM	SSF47459. HLH_basic. 1 hit.
PROSITE	PS50888. HLH. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q5K548_DANRE

Accession

Primary (citable) accession number: Q5K548

Entry history

Integrated into UniProtKB/TrEMBL:	February 15, 2005
Last sequence update:	February 15, 2005
Last modified:	January 25, 2012
This is version 56 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)