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Q5JUR7

- TEX30_HUMAN

UniProt

Q5JUR7 - TEX30_HUMAN

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Protein
Testis-expressed sequence 30 protein
Gene
TEX30, C13orf27
Organism
Homo sapiens (Human)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Testis-expressed sequence 30 protein
Gene namesi
Name:TEX30
Synonyms:C13orf27
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640: Chromosome 13

Organism-specific databases

HGNCiHGNC:25188. TEX30.

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA147358470.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 227227Testis-expressed sequence 30 protein
PRO_0000274312Add
BLAST

Proteomic databases

MaxQBiQ5JUR7.
PaxDbiQ5JUR7.
PRIDEiQ5JUR7.

PTM databases

PhosphoSiteiQ5JUR7.

Expressioni

Gene expression databases

ArrayExpressiQ5JUR7.
BgeeiQ5JUR7.
CleanExiHS_C13orf27.
GenevestigatoriQ5JUR7.

Organism-specific databases

HPAiHPA053545.

Interactioni

Protein-protein interaction databases

BioGridi124998. 4 interactions.
STRINGi9606.ENSP00000365199.

Structurei

3D structure databases

ProteinModelPortaliQ5JUR7.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3571.
HOGENOMiHOG000006654.
HOVERGENiHBG081256.
InParanoidiQ5JUR7.
OMAiYPLHRPK.
OrthoDBiEOG7DC25Q.
PhylomeDBiQ5JUR7.
TreeFamiTF332335.

Family and domain databases

Gene3Di3.40.50.1820. 1 hit.
InterProiIPR029058. AB_hydrolase.
IPR029059. AB_hydrolase_5.
IPR026555. NSL3/Tex30.
[Graphical view]
PANTHERiPTHR13136. PTHR13136. 1 hit.
PfamiPF12695. Abhydrolase_5. 1 hit.
[Graphical view]
SUPFAMiSSF53474. SSF53474. 1 hit.

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: Q5JUR7-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

MSHTEVKLKI PFGNKLLDAV CLVPNKSLTY GIILTHGASG DMNLPHLMSL    50
ASHLASHGFF CLRFTCKGLN IVHRIKAYKS VLNYLKTSGE YKLAGVFLGG 100
RSMGSRAAAS VMCHIEPDDG DDFVRGLICI SYPLHHPKQQ HKLRDEDLFR 150
LKEPVLFVSG SADEMCEKNL LEKVAQKMQA PHKIHWIEKA NHSMAVKGRS 200
TNDVFKEINT QILFWIQEIT EMDKKCH 227
Length:227
Mass (Da):25,585
Last modified:February 15, 2005 - v1
Checksum:iB37C06A38A91E774
GO
Isoform 2 (identifier: Q5JUR7-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     100-113: GRSMGSRAAASVMC → ELVGESGTENASSP
     114-227: Missing.

Note: No experimental confirmation available. Gene prediction based on EST data.

Show »
Length:113
Mass (Da):12,220
Checksum:i6C724738FA56E3E2
GO

Sequence cautioni

The sequence AAH15148.2 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei100 – 11314GRSMG…ASVMC → ELVGESGTENASSP in isoform 2.
VSP_055706Add
BLAST
Alternative sequencei114 – 227114Missing in isoform 2.
VSP_055707Add
BLAST

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL157769 Genomic DNA. No translation available.
BC015148 mRNA. Translation: AAH15148.2. Different initiation.
CCDSiCCDS9503.2.
RefSeqiNP_001273704.1. NM_001286775.1.
NP_001273705.1. NM_001286776.1.
NP_620134.3. NM_138779.4.
XP_005254154.1. XM_005254097.1.
UniGeneiHs.398111.

Genome annotation databases

EnsembliENST00000376019; ENSP00000365187; ENSG00000151287.
ENST00000376021; ENSP00000365189; ENSG00000151287.
ENST00000376027; ENSP00000365195; ENSG00000151287.
ENST00000376029; ENSP00000365197; ENSG00000151287.
ENST00000376032; ENSP00000365200; ENSG00000151287.
GeneIDi93081.
KEGGihsa:93081.
UCSCiuc001vpn.3. human.

Polymorphism databases

DMDMi74742331.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL157769 Genomic DNA. No translation available.
BC015148 mRNA. Translation: AAH15148.2 . Different initiation.
CCDSi CCDS9503.2.
RefSeqi NP_001273704.1. NM_001286775.1.
NP_001273705.1. NM_001286776.1.
NP_620134.3. NM_138779.4.
XP_005254154.1. XM_005254097.1.
UniGenei Hs.398111.

3D structure databases

ProteinModelPortali Q5JUR7.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

BioGridi 124998. 4 interactions.
STRINGi 9606.ENSP00000365199.

Chemistry

ChEMBLi CHEMBL2189125.

PTM databases

PhosphoSitei Q5JUR7.

Polymorphism databases

DMDMi 74742331.

Proteomic databases

MaxQBi Q5JUR7.
PaxDbi Q5JUR7.
PRIDEi Q5JUR7.

Protocols and materials databases

DNASUi 93081.
Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENST00000376019 ; ENSP00000365187 ; ENSG00000151287 .
ENST00000376021 ; ENSP00000365189 ; ENSG00000151287 .
ENST00000376027 ; ENSP00000365195 ; ENSG00000151287 .
ENST00000376029 ; ENSP00000365197 ; ENSG00000151287 .
ENST00000376032 ; ENSP00000365200 ; ENSG00000151287 .
GeneIDi 93081.
KEGGi hsa:93081.
UCSCi uc001vpn.3. human.

Organism-specific databases

CTDi 93081.
GeneCardsi GC13M103419.
HGNCi HGNC:25188. TEX30.
HPAi HPA053545.
neXtProti NX_Q5JUR7.
PharmGKBi PA147358470.
GenAtlasi Search...

Phylogenomic databases

eggNOGi COG3571.
HOGENOMi HOG000006654.
HOVERGENi HBG081256.
InParanoidi Q5JUR7.
OMAi YPLHRPK.
OrthoDBi EOG7DC25Q.
PhylomeDBi Q5JUR7.
TreeFami TF332335.

Miscellaneous databases

GenomeRNAii 93081.
NextBioi 77963.
PROi Q5JUR7.

Gene expression databases

ArrayExpressi Q5JUR7.
Bgeei Q5JUR7.
CleanExi HS_C13orf27.
Genevestigatori Q5JUR7.

Family and domain databases

Gene3Di 3.40.50.1820. 1 hit.
InterProi IPR029058. AB_hydrolase.
IPR029059. AB_hydrolase_5.
IPR026555. NSL3/Tex30.
[Graphical view ]
PANTHERi PTHR13136. PTHR13136. 1 hit.
Pfami PF12695. Abhydrolase_5. 1 hit.
[Graphical view ]
SUPFAMi SSF53474. SSF53474. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "The DNA sequence and analysis of human chromosome 13."
    Dunham A., Matthews L.H., Burton J., Ashurst J.L., Howe K.L., Ashcroft K.J., Beare D.M., Burford D.C., Hunt S.E., Griffiths-Jones S., Jones M.C., Keenan S.J., Oliver K., Scott C.E., Ainscough R., Almeida J.P., Ambrose K.D., Andrews D.T.
    , Ashwell R.I.S., Babbage A.K., Bagguley C.L., Bailey J., Bannerjee R., Barlow K.F., Bates K., Beasley H., Bird C.P., Bray-Allen S., Brown A.J., Brown J.Y., Burrill W., Carder C., Carter N.P., Chapman J.C., Clamp M.E., Clark S.Y., Clarke G., Clee C.M., Clegg S.C., Cobley V., Collins J.E., Corby N., Coville G.J., Deloukas P., Dhami P., Dunham I., Dunn M., Earthrowl M.E., Ellington A.G., Faulkner L., Frankish A.G., Frankland J., French L., Garner P., Garnett J., Gilbert J.G.R., Gilson C.J., Ghori J., Grafham D.V., Gribble S.M., Griffiths C., Hall R.E., Hammond S., Harley J.L., Hart E.A., Heath P.D., Howden P.J., Huckle E.J., Hunt P.J., Hunt A.R., Johnson C., Johnson D., Kay M., Kimberley A.M., King A., Laird G.K., Langford C.J., Lawlor S., Leongamornlert D.A., Lloyd D.M., Lloyd C., Loveland J.E., Lovell J., Martin S., Mashreghi-Mohammadi M., McLaren S.J., McMurray A., Milne S., Moore M.J.F., Nickerson T., Palmer S.A., Pearce A.V., Peck A.I., Pelan S., Phillimore B., Porter K.M., Rice C.M., Searle S., Sehra H.K., Shownkeen R., Skuce C.D., Smith M., Steward C.A., Sycamore N., Tester J., Thomas D.W., Tracey A., Tromans A., Tubby B., Wall M., Wallis J.M., West A.P., Whitehead S.L., Willey D.L., Wilming L., Wray P.W., Wright M.W., Young L., Coulson A., Durbin R.M., Hubbard T., Sulston J.E., Beck S., Bentley D.R., Rogers J., Ross M.T.
    Nature 428:522-528(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
    Tissue: Testis.

Entry informationi

Entry nameiTEX30_HUMAN
AccessioniPrimary (citable) accession number: Q5JUR7
Secondary accession number(s): Q5JUR8, Q96KZ8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 6, 2007
Last sequence update: February 15, 2005
Last modified: September 3, 2014
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 13
    Human chromosome 13: entries, gene names and cross-references to MIM

External Data

Dasty 3

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