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Protein

Putative uncharacterized protein encoded by LINC01556

Gene

LINC01556

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Names & Taxonomyi

Protein namesi
Recommended name:
Putative uncharacterized protein encoded by LINC01556Imported
Gene namesi
Name:LINC01556Imported
Synonyms:C6orf100Imported
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640 Componenti: Unplaced

Organism-specific databases

HGNCiHGNC:21195. LINC01556.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 6262Putative uncharacterized protein encoded by LINC01556PRO_0000309188Add
BLAST

Proteomic databases

PaxDbiQ5JQF7.
PRIDEiQ5JQF7.

PTM databases

PhosphoSiteiQ5JQF7.

Expressioni

Organism-specific databases

HPAiHPA043694.

Structurei

3D structure databases

ProteinModelPortaliQ5JQF7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiNOG71562.
InParanoidiQ5JQF7.
OMAiKCPLAKE.
OrthoDBiEOG7Q5HH6.
PhylomeDBiQ5JQF7.
TreeFamiTF341497.

Sequencei

Sequence statusi: Complete.

Q5JQF7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLQVVQEGNP APFIINTVKR GRRDRERQRT PWAPHPLGFQ GRRYIYESPN
60
HRGKDSSFLA QK
Length:62
Mass (Da):7,289
Last modified:June 28, 2011 - v2
Checksum:iC9080538DCB47379
GO

Sequence cautioni

The sequence CAC69878.1 differs from that shown. Reason: Erroneous initiation. Curated

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti41 – 411G → E.
Corresponds to variant rs2071790 [ dbSNP | Ensembl ].
VAR_036902

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX927167 Genomic DNA. Translation: CAQ07639.1.
Z84476 Genomic DNA. Translation: CAC69878.1. Different initiation.
AL662871 Genomic DNA. Translation: CAI18382.1.
AL954865 Genomic DNA. Translation: CAI18573.1.
AL662865 Genomic DNA. Translation: CAI41639.1.
BX248109 Genomic DNA. Translation: CAM26172.1.
CR936883 Genomic DNA. Translation: CAQ09809.1.
UniGeneiHs.453549.

Genome annotation databases

EnsembliENST00000377186; ENSP00000366391; ENSG00000204709.
ENST00000383656; ENSP00000373152; ENSG00000206526.
ENST00000421470; ENSP00000410635; ENSG00000231041.
ENST00000434916; ENSP00000394134; ENSG00000237313.
ENST00000438403; ENSP00000401725; ENSG00000233566.
ENST00000438996; ENSP00000396675; ENSG00000237634.

Keywords - Coding sequence diversityi

Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX927167 Genomic DNA. Translation: CAQ07639.1.
Z84476 Genomic DNA. Translation: CAC69878.1. Different initiation.
AL662871 Genomic DNA. Translation: CAI18382.1.
AL954865 Genomic DNA. Translation: CAI18573.1.
AL662865 Genomic DNA. Translation: CAI41639.1.
BX248109 Genomic DNA. Translation: CAM26172.1.
CR936883 Genomic DNA. Translation: CAQ09809.1.
UniGeneiHs.453549.

3D structure databases

ProteinModelPortaliQ5JQF7.
ModBaseiSearch...
MobiDBiSearch...

PTM databases

PhosphoSiteiQ5JQF7.

Proteomic databases

PaxDbiQ5JQF7.
PRIDEiQ5JQF7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000377186; ENSP00000366391; ENSG00000204709.
ENST00000383656; ENSP00000373152; ENSG00000206526.
ENST00000421470; ENSP00000410635; ENSG00000231041.
ENST00000434916; ENSP00000394134; ENSG00000237313.
ENST00000438403; ENSP00000401725; ENSG00000233566.
ENST00000438996; ENSP00000396675; ENSG00000237634.

Organism-specific databases

GeneCardsiGC06P028914.
GC06Pj28908.
GC06Pl28912.
GC06Pm28911.
GC06Pn28911.
GC06Po28913.
HGNCiHGNC:21195. LINC01556.
HPAiHPA043694.
neXtProtiNX_Q5JQF7.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiNOG71562.
InParanoidiQ5JQF7.
OMAiKCPLAKE.
OrthoDBiEOG7Q5HH6.
PhylomeDBiQ5JQF7.
TreeFamiTF341497.

Miscellaneous databases

NextBioi13620982.
PROiQ5JQF7.

Family and domain databases

ProtoNetiSearch...

Publicationsi

  1. "The DNA sequence and analysis of human chromosome 6."
    Mungall A.J., Palmer S.A., Sims S.K., Edwards C.A., Ashurst J.L., Wilming L., Jones M.C., Horton R., Hunt S.E., Scott C.E., Gilbert J.G.R., Clamp M.E., Bethel G., Milne S., Ainscough R., Almeida J.P., Ambrose K.D., Andrews T.D.
    , Ashwell R.I.S., Babbage A.K., Bagguley C.L., Bailey J., Banerjee R., Barker D.J., Barlow K.F., Bates K., Beare D.M., Beasley H., Beasley O., Bird C.P., Blakey S.E., Bray-Allen S., Brook J., Brown A.J., Brown J.Y., Burford D.C., Burrill W., Burton J., Carder C., Carter N.P., Chapman J.C., Clark S.Y., Clark G., Clee C.M., Clegg S., Cobley V., Collier R.E., Collins J.E., Colman L.K., Corby N.R., Coville G.J., Culley K.M., Dhami P., Davies J., Dunn M., Earthrowl M.E., Ellington A.E., Evans K.A., Faulkner L., Francis M.D., Frankish A., Frankland J., French L., Garner P., Garnett J., Ghori M.J., Gilby L.M., Gillson C.J., Glithero R.J., Grafham D.V., Grant M., Gribble S., Griffiths C., Griffiths M.N.D., Hall R., Halls K.S., Hammond S., Harley J.L., Hart E.A., Heath P.D., Heathcott R., Holmes S.J., Howden P.J., Howe K.L., Howell G.R., Huckle E., Humphray S.J., Humphries M.D., Hunt A.R., Johnson C.M., Joy A.A., Kay M., Keenan S.J., Kimberley A.M., King A., Laird G.K., Langford C., Lawlor S., Leongamornlert D.A., Leversha M., Lloyd C.R., Lloyd D.M., Loveland J.E., Lovell J., Martin S., Mashreghi-Mohammadi M., Maslen G.L., Matthews L., McCann O.T., McLaren S.J., McLay K., McMurray A., Moore M.J.F., Mullikin J.C., Niblett D., Nickerson T., Novik K.L., Oliver K., Overton-Larty E.K., Parker A., Patel R., Pearce A.V., Peck A.I., Phillimore B.J.C.T., Phillips S., Plumb R.W., Porter K.M., Ramsey Y., Ranby S.A., Rice C.M., Ross M.T., Searle S.M., Sehra H.K., Sheridan E., Skuce C.D., Smith S., Smith M., Spraggon L., Squares S.L., Steward C.A., Sycamore N., Tamlyn-Hall G., Tester J., Theaker A.J., Thomas D.W., Thorpe A., Tracey A., Tromans A., Tubby B., Wall M., Wallis J.M., West A.P., White S.S., Whitehead S.L., Whittaker H., Wild A., Willey D.J., Wilmer T.E., Wood J.M., Wray P.W., Wyatt J.C., Young L., Younger R.M., Bentley D.R., Coulson A., Durbin R.M., Hubbard T., Sulston J.E., Dunham I., Rogers J., Beck S.
    Nature 425:805-811(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Entry informationi

Entry nameiCF100_HUMAN
AccessioniPrimary (citable) accession number: Q5JQF7
Secondary accession number(s): B0S7Y3
, B0V298, Q5SNN6, Q96KW1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 13, 2007
Last sequence update: June 28, 2011
Last modified: June 24, 2015
This is version 67 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 6
    Human chromosome 6: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.