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Q5JQC4 (CT47A_HUMAN) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 78. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Cancer/testis antigen 47A
Alternative name(s):
Cancer/testis antigen 47
Short name=CT47
Gene names
Name:CT47A1
Synonyms:CT47.1
AND
Name:CT47A2
Synonyms:CT47.2
AND
Name:CT47A3
Synonyms:CT47.3
AND
Name:CT47A4
Synonyms:CT47.4
AND
Name:CT47A5
Synonyms:CT47.5
AND
Name:CT47A6
Synonyms:CT47.6
AND
Name:CT47A7
Synonyms:CT47.7
AND
Name:CT47A8
Synonyms:CT47.8
AND
Name:CT47A9
Synonyms:CT47.9
AND
Name:CT47A10
Synonyms:CT47.10
AND
Name:CT47A11
Synonyms:CT47.11
AND
Name:CT47A12
Synonyms:CT47.12
OrganismHomo sapiens (Human) [Reference proteome]
Taxonomic identifier9606 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Protein attributes

Sequence length288 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Tissue specificity

Strongly expressed in testis, low expression in placenta, and very low expression in brain. Ref.3

Ontologies

Keywords
   DomainCoiled coil
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 288288Cancer/testis antigen 47A
PRO_0000284450

Regions

Coiled coil259 – 28729 Potential
Compositional bias92 – 987Poly-Glu

Experimental info

Sequence conflict1611L → P in AAH29540. Ref.2

Sequences

Sequence LengthMass (Da)Tools
Q5JQC4 [UniParc].

Last modified February 15, 2005. Version 1.
Checksum: AED9537B9C8EBF60

FASTA28830,100
        10         20         30         40         50         60 
MSATGDRHPT QGDQEAPVSQ EGAQAEAAGA GNQEGGDSGP DSSDVVPAAE VVGVAGPVEG 

        70         80         90        100        110        120 
LGEEEGEQAA GLAAVPRGGS AEEDSDIGPA TEEEEEEEGN EAANFDLAVV ARRYPASGIH 

       130        140        150        160        170        180 
FVLLDMVHSL LHRLSHNDHI LIENRQLSRL MVGPHAAARN LWGNLPPLLL PQRLGAGAAA 

       190        200        210        220        230        240 
RAGEGLGLIQ EAASVPEPAV PADLAEMARE PAEEAAEEKL SEEATEEPDA EEPATEEPTA 

       250        260        270        280 
QEATAPEEVT KSQPEKWDEE AQDAAGEEEK EQEKEKDAEN KVKNSKGT 

« Hide

References

« Hide 'large scale' references
[1]"The DNA sequence of the human X chromosome."
Ross M.T., Grafham D.V., Coffey A.J., Scherer S., McLay K., Muzny D., Platzer M., Howell G.R., Burrows C., Bird C.P., Frankish A., Lovell F.L., Howe K.L., Ashurst J.L., Fulton R.S., Sudbrak R., Wen G., Jones M.C. expand/collapse author list , Hurles M.E., Andrews T.D., Scott C.E., Searle S., Ramser J., Whittaker A., Deadman R., Carter N.P., Hunt S.E., Chen R., Cree A., Gunaratne P., Havlak P., Hodgson A., Metzker M.L., Richards S., Scott G., Steffen D., Sodergren E., Wheeler D.A., Worley K.C., Ainscough R., Ambrose K.D., Ansari-Lari M.A., Aradhya S., Ashwell R.I., Babbage A.K., Bagguley C.L., Ballabio A., Banerjee R., Barker G.E., Barlow K.F., Barrett I.P., Bates K.N., Beare D.M., Beasley H., Beasley O., Beck A., Bethel G., Blechschmidt K., Brady N., Bray-Allen S., Bridgeman A.M., Brown A.J., Brown M.J., Bonnin D., Bruford E.A., Buhay C., Burch P., Burford D., Burgess J., Burrill W., Burton J., Bye J.M., Carder C., Carrel L., Chako J., Chapman J.C., Chavez D., Chen E., Chen G., Chen Y., Chen Z., Chinault C., Ciccodicola A., Clark S.Y., Clarke G., Clee C.M., Clegg S., Clerc-Blankenburg K., Clifford K., Cobley V., Cole C.G., Conquer J.S., Corby N., Connor R.E., David R., Davies J., Davis C., Davis J., Delgado O., Deshazo D., Dhami P., Ding Y., Dinh H., Dodsworth S., Draper H., Dugan-Rocha S., Dunham A., Dunn M., Durbin K.J., Dutta I., Eades T., Ellwood M., Emery-Cohen A., Errington H., Evans K.L., Faulkner L., Francis F., Frankland J., Fraser A.E., Galgoczy P., Gilbert J., Gill R., Gloeckner G., Gregory S.G., Gribble S., Griffiths C., Grocock R., Gu Y., Gwilliam R., Hamilton C., Hart E.A., Hawes A., Heath P.D., Heitmann K., Hennig S., Hernandez J., Hinzmann B., Ho S., Hoffs M., Howden P.J., Huckle E.J., Hume J., Hunt P.J., Hunt A.R., Isherwood J., Jacob L., Johnson D., Jones S., de Jong P.J., Joseph S.S., Keenan S., Kelly S., Kershaw J.K., Khan Z., Kioschis P., Klages S., Knights A.J., Kosiura A., Kovar-Smith C., Laird G.K., Langford C., Lawlor S., Leversha M., Lewis L., Liu W., Lloyd C., Lloyd D.M., Loulseged H., Loveland J.E., Lovell J.D., Lozado R., Lu J., Lyne R., Ma J., Maheshwari M., Matthews L.H., McDowall J., McLaren S., McMurray A., Meidl P., Meitinger T., Milne S., Miner G., Mistry S.L., Morgan M., Morris S., Mueller I., Mullikin J.C., Nguyen N., Nordsiek G., Nyakatura G., O'dell C.N., Okwuonu G., Palmer S., Pandian R., Parker D., Parrish J., Pasternak S., Patel D., Pearce A.V., Pearson D.M., Pelan S.E., Perez L., Porter K.M., Ramsey Y., Reichwald K., Rhodes S., Ridler K.A., Schlessinger D., Schueler M.G., Sehra H.K., Shaw-Smith C., Shen H., Sheridan E.M., Shownkeen R., Skuce C.D., Smith M.L., Sotheran E.C., Steingruber H.E., Steward C.A., Storey R., Swann R.M., Swarbreck D., Tabor P.E., Taudien S., Taylor T., Teague B., Thomas K., Thorpe A., Timms K., Tracey A., Trevanion S., Tromans A.C., d'Urso M., Verduzco D., Villasana D., Waldron L., Wall M., Wang Q., Warren J., Warry G.L., Wei X., West A., Whitehead S.L., Whiteley M.N., Wilkinson J.E., Willey D.L., Williams G., Williams L., Williamson A., Williamson H., Wilming L., Woodmansey R.L., Wray P.W., Yen J., Zhang J., Zhou J., Zoghbi H., Zorilla S., Buck D., Reinhardt R., Poustka A., Rosenthal A., Lehrach H., Meindl A., Minx P.J., Hillier L.W., Willard H.F., Wilson R.K., Waterston R.H., Rice C.M., Vaudin M., Coulson A., Nelson D.L., Weinstock G., Sulston J.E., Durbin R.M., Hubbard T., Gibbs R.A., Beck S., Rogers J., Bentley D.R.
Nature 434:325-337(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
[2]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Testis.
[3]"Identification of a new cancer/testis gene family, CT47, among expressed multicopy genes on the human X chromosome."
Chen Y.-T., Iseli C., Venditti C.A., Old L.J., Simpson A.J.G., Jongeneel C.V.
Genes Chromosomes Cancer 45:392-400(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: IDENTIFICATION, TISSUE SPECIFICITY.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AL670379 Genomic DNA. Translation: CAI42057.1.
AL670379 Genomic DNA. Translation: CAI42058.1.
AL670379 Genomic DNA. Translation: CAI42059.1.
AL670379 Genomic DNA. Translation: CAI42060.1.
AL670379 Genomic DNA. Translation: CAI42061.1.
AL670379 Genomic DNA. Translation: CAI42062.1.
AL670379 Genomic DNA. Translation: CAI42063.1.
AL670379 Genomic DNA. Translation: CAI42064.1.
AL670379 Genomic DNA. Translation: CAI42065.1.
AL670379 Genomic DNA. Translation: CAI42066.1.
AL670379 Genomic DNA. Translation: CAI42067.1.
AC008162 Genomic DNA. No translation available.
BC029540 mRNA. Translation: AAH29540.1.
CCDSCCDS35381.1.
CCDS35382.1.
CCDS35383.1.
CCDS35384.1.
CCDS35385.1.
CCDS35386.1.
CCDS35387.1.
CCDS35388.1.
CCDS35389.1.
CCDS35390.1.
CCDS35391.1.
CCDS56607.1.
RefSeqNP_001073606.1. NM_001080137.1.
NP_001073607.1. NM_001080138.1.
NP_001073608.1. NM_001080139.1.
NP_001073609.1. NM_001080140.1.
NP_001073610.1. NM_001080141.1.
NP_001073611.1. NM_001080142.1.
NP_001073612.1. NM_001080143.1.
NP_001073613.1. NM_001080144.1.
NP_001073614.1. NM_001080145.1.
NP_001073615.1. NM_001080146.1.
NP_001229851.1. NM_001242922.1.
NP_775842.2. NM_173571.2.
UniGeneHs.522775.
Hs.712504.
Hs.715076.
Hs.723061.
Hs.729566.

3D structure databases

ProteinModelPortalQ5JQC4.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING9606.ENSP00000360328.

PTM databases

PhosphoSiteQ5JQC4.

Polymorphism databases

DMDM74741726.

Proteomic databases

MaxQBQ5JQC4.
PaxDbQ5JQC4.
PeptideAtlasQ5JQC4.
PRIDEQ5JQC4.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENST00000371280; ENSP00000360328; ENSG00000236371.
ENST00000415858; ENSP00000389513; ENSG00000230594.
ENST00000416816; ENSP00000414509; ENSG00000226685.
ENST00000417256; ENSP00000408204; ENSG00000226600.
ENST00000419194; ENSP00000399711; ENSG00000237957.
ENST00000419982; ENSP00000391318; ENSG00000226685.
ENST00000430448; ENSP00000411909; ENSG00000224089.
ENST00000433030; ENSP00000393315; ENSG00000236371.
ENST00000434414; ENSP00000404093; ENSG00000236371.
ENST00000434883; ENSP00000392283; ENSG00000228517.
ENST00000439466; ENSP00000390070; ENSG00000237957.
ENST00000441330; ENSP00000398559; ENSG00000236126.
ENST00000443600; ENSP00000415974; ENSG00000226023.
ENST00000457020; ENSP00000410400; ENSG00000226929.
ENST00000457977; ENSP00000400046; ENSG00000230347.
ENST00000458218; ENSP00000414253; ENSG00000242362.
GeneID100507170.
255313.
653282.
728036.
728042.
728049.
728062.
728072.
728075.
728082.
728090.
728096.
KEGGhsa:100507170.
hsa:255313.
hsa:653282.
hsa:728036.
hsa:728042.
hsa:728049.
hsa:728062.
hsa:728072.
hsa:728075.
hsa:728082.
hsa:728090.
hsa:728096.
UCSCuc004eta.3. human.

Organism-specific databases

CTD100507170.
255313.
653282.
728036.
728042.
728049.
728062.
728072.
728075.
728082.
728090.
728096.
GeneCardsGC0XM120012.
GC0XM120067.
GC0XM120072.
GC0XM120077.
GC0XM120082.
GC0XM120087.
GC0XM120092.
GC0XM120093.
GC0XM120101.
GC0XM120106.
GC0XM120111.
GC0XM120112.
HGNCHGNC:33282. CT47A1.
HGNC:33291. CT47A10.
HGNC:27397. CT47A11.
HGNC:33292. CT47A12.
HGNC:33283. CT47A2.
HGNC:33284. CT47A3.
HGNC:33285. CT47A4.
HGNC:33286. CT47A5.
HGNC:33287. CT47A6.
HGNC:33288. CT47A7.
HGNC:33289. CT47A8.
HGNC:33290. CT47A9.
HPAHPA042483.
MIM300592. gene.
300780. gene.
300781. gene.
300782. gene.
300783. gene.
300784. gene.
300785. gene.
300786. gene.
300787. gene.
300788. gene.
300789. gene.
neXtProtNX_Q5JQC4.
PharmGKBPA164718206.
GenAtlasSearch...

Phylogenomic databases

eggNOGNOG130989.
HOGENOMHOG000112037.
HOVERGENHBG094803.
InParanoidQ5JQC4.
OMARLSHNDH.
OrthoDBEOG71CFNT.
PhylomeDBQ5JQC4.
TreeFamTF342556.

Gene expression databases

BgeeQ5JQC4.
GenevestigatorQ5JQC4.

Family and domain databases

InterProIPR028930. CT47.
[Graphical view]
PANTHERPTHR32157. PTHR32157. 1 hit.
PfamPF15623. CT47. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio92541.
SOURCESearch...

Entry information

Entry nameCT47A_HUMAN
AccessionPrimary (citable) accession number: Q5JQC4
Secondary accession number(s): Q8N747
Entry history
Integrated into UniProtKB/Swiss-Prot: April 17, 2007
Last sequence update: February 15, 2005
Last modified: July 9, 2014
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Relevant documents

MIM cross-references

Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot

Human chromosome X

Human chromosome X: entries, gene names and cross-references to MIM