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Q5JKN1 (P2C05_ORYSJ) Reviewed, UniProtKB/Swiss-Prot

Last modified April 3, 2013. Version 60. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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to top of pageNames·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Probable protein phosphatase 2C 5
Short name=OsPP2C05
EC=3.1.3.16
Gene names
Ordered Locus Names:Os01g0552300, LOC_Os01g37130
ORF Names:OSJNBa0066C06.19
OrganismOryza sativa subsp. japonica (Rice) [Reference proteome]
Taxonomic identifier39947 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza ›

Protein attributes

Sequence length389 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Catalytic activity

A phosphoprotein + H2O = a protein + phosphate.

Cofactor

Binds 2 magnesium or manganese ions per subunit By similarity.

Subcellular location

Membrane; Single-pass membrane protein Potential.

Sequence similarities

Belongs to the PP2C family.

Contains 1 PP2C-like domain.

Alternative products

This entry describes 2 isoforms produced by alternative splicing. [Align] [Select]
Isoform 1 (identifier: Q5JKN1-1)

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
Isoform 2 (identifier: Q5JKN1-2)

The sequence of this isoform differs from the canonical sequence as follows:
     182-182: Missing.
Note: Derived from EST data. May be due to a competing acceptor splice site. No experimental confirmation available.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 389389Probable protein phosphatase 2C 5
PRO_0000363251

Regions

Transmembrane366 – 38823Helical; Potential
Domain56 – 340285PP2C-like

Sites

Metal binding921Manganese 1 By similarity
Metal binding921Manganese 2 By similarity
Metal binding931Manganese 1; via carbonyl oxygen By similarity
Metal binding2951Manganese 2 By similarity
Metal binding3381Manganese 2 By similarity

Natural variations

Alternative sequence1821Missing in isoform 2.
VSP_036258

Experimental info

Sequence conflict441G → S in AK106278. Ref.4

Sequences

Sequence LengthMass (Da)Tools
Isoform 1 [UniParc].

Last modified February 15, 2005. Version 1.
Checksum: A22EF6515BCF0C01

FASTA38941,738
        10         20         30         40         50         60 
MALLSPRVPR LPLASASAAG AGLRCCVSGG RAGSAAWCHA SAAGSVASSS SELEAIRWGT 

        70         80         90        100        110        120 
AKLQGARDEM EDEVVLRPGS LLDGFSFAAV FDGHAGFSAV EFLRDELYKE CAAALDGGAV 

       130        140        150        160        170        180 
LSTKNLDAIT DSIQRAFATV DANLSTWLEQ MDKEDESGAT ATAMFLRNDV LVVSHIGDSC 

       190        200        210        220        230        240 
LQVVSRGGRP QAVTNFHRPY GNKKASLEEV KRIRAAGGWI VDGRICGEIS VSRAFGDIRF 

       250        260        270        280        290        300 
KTRKNEMLVK GVKEGRWTEK FISRINFKGD LIVSSPDVSL VELGPDVEFV LLATDGLWDY 

       310        320        330        340        350        360 
IKSSEAVALV RDQLRQHGDV QVACEALGQI ALDRRSQDNI SIVIADLGRT NWKELPAQRP 

       370        380 
NLFLELTQAV ATVGAVSLGI YISSLLALQ

« Hide

Isoform 2 [UniParc].

Checksum: 407CB5417AC44BEF
Show »

FASTA38841,610

References

« Hide 'large scale' references
[1]"The genome sequence and structure of rice chromosome 1."
Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M. expand/collapse author list , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.
Nature 420:312-316(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[2]"The map-based sequence of the rice genome."
International rice genome sequencing project (IRGSP)
Nature 436:793-800(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Nipponbare.
[3]"The rice annotation project database (RAP-DB): 2008 update."
The rice annotation project (RAP)
Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: GENOME REANNOTATION.
Strain: cv. Nipponbare.
[4]"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
The rice full-length cDNA consortium
Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
Strain: cv. Nipponbare.
[5]"Genome-wide and expression analysis of protein phosphatase 2C in rice and Arabidopsis."
Xue T., Wang D., Zhang S., Ehlting J., Ni F., Jacab S., Zheng C., Zhong Y.
BMC Genomics 9:550-550(2008) [PubMed] [Europe PMC] [Abstract]
Cited for: GENE FAMILY, NOMENCLATURE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AP003933 Genomic DNA. Translation: BAD87977.1.
AP008207 Genomic DNA. Translation: BAF05225.1.
AK106278 mRNA. No translation available.
RefSeqNP_001043311.1. NM_001049846.1.
UniGeneOs.15194.

3D structure databases

ProteinModelPortalQ5JKN1.
ModBaseSearch...

Proteomic databases

PRIDEQ5JKN1.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsLOC_Os01g37130.1; LOC_Os01g37130.1; LOC_Os01g37130.
GeneID4325851.
KEGGosa:4325851.

Organism-specific databases

GrameneQ5JKN1.

Phylogenomic databases

eggNOGCOG0631.
HOGENOMHOG000029436.
OMAIVNGRIC.
ProtClustDBCLSN2685522.

Gene expression databases

ArrayExpressQ5JKN1.

Family and domain databases

Gene3D3.60.40.10. 1 hit.
InterProIPR001932. PP2C-like.
IPR000222. PP2C_Mn2_Asp60_BS.
IPR015655. Protein_Pase_2C.
[Graphical view]
PANTHERPTHR13832. PTHR13832. 1 hit.
PfamPF00481. PP2C. 1 hit.
[Graphical view]
SMARTSM00331. PP2C_SIG. 1 hit.
SM00332. PP2Cc. 1 hit.
[Graphical view]
SUPFAMSSF81606. PP2C-related. 1 hit.
PROSITEPS01032. PP2C. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameP2C05_ORYSJ
AccessionPrimary (citable) accession number: Q5JKN1
Entry history
Integrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: February 15, 2005
Last modified: April 3, 2013
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Relevant documents

Oryza sativa (rice)

Index of Oryza sativa entries and their corresponding gene designations

SIMILARITY comments

Index of protein domains and families

to top of pageNames·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents