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Q5JK68

- CDKC2_ORYSJ

UniProt

Q5JK68 - CDKC2_ORYSJ

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Protein

Cyclin-dependent kinase C-2

Gene

CDKC-2

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli

Functioni

Catalytic activityi

ATP + a protein = ADP + a phosphoprotein.
ATP + [DNA-directed RNA polymerase] = ADP + [DNA-directed RNA polymerase] phosphate.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei54 – 541ATPPROSITE-ProRule annotation
Active sitei164 – 1641Proton acceptorPROSITE-ProRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi31 – 399ATPPROSITE-ProRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. cyclin-dependent protein serine/threonine kinase activity Source: UniProtKB-EC
  3. RNA polymerase II carboxy-terminal domain kinase activity Source: UniProtKB-EC
Complete GO annotation...

Keywords - Molecular functioni

Kinase, Serine/threonine-protein kinase, Transferase

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Cyclin-dependent kinase C-2 (EC:2.7.11.22, EC:2.7.11.23)
Short name:
CDKC;2
Gene namesi
Name:CDKC-2
Synonyms:CDKC1
Ordered Locus Names:Os01g0958000, LOC_Os01g72790
ORF Names:OJ1294_F06.25
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763: Chromosome 1

Organism-specific databases

GrameneiQ5JK68.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 513513Cyclin-dependent kinase C-2PRO_0000296101Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei35 – 351PhosphothreonineBy similarity
Modified residuei36 – 361PhosphotyrosineBy similarity
Modified residuei191 – 1911PhosphoserineBy similarity
Modified residuei198 – 1981PhosphothreonineBy similarity

Keywords - PTMi

Phosphoprotein

Proteomic databases

PRIDEiQ5JK68.

Expressioni

Inductioni

Down-regulated by cytokinin.1 Publication

Gene expression databases

ExpressionAtlasiQ5JK68. baseline.

Structurei

3D structure databases

ProteinModelPortaliQ5JK68.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini25 – 325301Protein kinasePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 protein kinase domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiCOG0515.
HOGENOMiHOG000233024.
InParanoidiQ5JK68.
KOiK08819.
OMAiQGRPDGN.

Family and domain databases

InterProiIPR011009. Kinase-like_dom.
IPR000719. Prot_kinase_dom.
IPR017441. Protein_kinase_ATP_BS.
IPR002290. Ser/Thr_dual-sp_kinase.
IPR008271. Ser/Thr_kinase_AS.
[Graphical view]
PfamiPF00069. Pkinase. 1 hit.
[Graphical view]
SMARTiSM00220. S_TKc. 1 hit.
[Graphical view]
SUPFAMiSSF56112. SSF56112. 1 hit.
PROSITEiPS00107. PROTEIN_KINASE_ATP. 1 hit.
PS50011. PROTEIN_KINASE_DOM. 1 hit.
PS00108. PROTEIN_KINASE_ST. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5JK68-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAVAAPGQLN LDESPSWGSR SVDCFEKLEQ IGEGTYGQVY MAKETETNEI
60 70 80 90 100
VALKKIRMDN EREGFPITAI REIKILKKLH HQNVIQLKEI VTSPGPERDE
110 120 130 140 150
QGKPIEGNKY KGSIYMVFEY MDHDLTGLAD RPGMRFTVPQ IKCYMRQLLT
160 170 180 190 200
GLHYCHVNQV LHRDIKGSNL LIDNEGNLKL ADFGLARSFS SDHNGNLTNR
210 220 230 240 250
VITLWYRPPE LLLGSTRYGP AVDMWSVGCI FAELLNGKPI LTGKNEPEQL
260 270 280 290 300
SKIFELCGTP DELIWPGVTK MPWYNNFKPQ RPMKRRVKES FKHFDQHALD
310 320 330 340 350
LLEKMLTLDP SQRISAKDAL DAEYFWTDPL PCDPKSLPKY EASHEFQTKK
360 370 380 390 400
KRQQQRQAEE AAKRQKLQHP PPHSRLPPIQ NPGQPHQIRP GQPMHNAPPV
410 420 430 440 450
AAGPSHHYAK PRGPGGPNRY PQGGNQGGYN PNRGGQGGGY GSGPYPQQGR
460 470 480 490 500
GPPPYPGGGM GGAGGPRGGG GSGYGVGGPN YQQGGPYGAS GPGRGPNYNQ
510
GGSRNQQQYG NWQ
Length:513
Mass (Da):56,826
Last modified:February 15, 2005 - v1
Checksum:i77BFC08EF38E1D96
GO

Sequence cautioni

The sequence CAD54641.1 differs from that shown. Reason: Frameshift at position 309.
The sequence CAD92448.1 differs from that shown. Reason: Frameshift at position 309.

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AJ512410 mRNA. Translation: CAD54641.1. Frameshift.
AJ564977 mRNA. Translation: CAD92448.1. Frameshift.
AP004326 Genomic DNA. Translation: BAD88154.1.
AP008207 Genomic DNA. Translation: BAF07364.1.
RefSeqiNP_001045450.1. NM_001051985.1.
UniGeneiOs.14473.

Genome annotation databases

EnsemblPlantsiOS01T0958000-01; OS01T0958000-01; OS01G0958000.
GeneIDi4325386.
KEGGiosa:4325386.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AJ512410 mRNA. Translation: CAD54641.1 . Frameshift.
AJ564977 mRNA. Translation: CAD92448.1 . Frameshift.
AP004326 Genomic DNA. Translation: BAD88154.1 .
AP008207 Genomic DNA. Translation: BAF07364.1 .
RefSeqi NP_001045450.1. NM_001051985.1.
UniGenei Os.14473.

3D structure databases

ProteinModelPortali Q5JK68.
ModBasei Search...
MobiDBi Search...

Proteomic databases

PRIDEi Q5JK68.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi OS01T0958000-01 ; OS01T0958000-01 ; OS01G0958000 .
GeneIDi 4325386.
KEGGi osa:4325386.

Organism-specific databases

Gramenei Q5JK68.

Phylogenomic databases

eggNOGi COG0515.
HOGENOMi HOG000233024.
InParanoidi Q5JK68.
KOi K08819.
OMAi QGRPDGN.

Gene expression databases

ExpressionAtlasi Q5JK68. baseline.

Family and domain databases

InterProi IPR011009. Kinase-like_dom.
IPR000719. Prot_kinase_dom.
IPR017441. Protein_kinase_ATP_BS.
IPR002290. Ser/Thr_dual-sp_kinase.
IPR008271. Ser/Thr_kinase_AS.
[Graphical view ]
Pfami PF00069. Pkinase. 1 hit.
[Graphical view ]
SMARTi SM00220. S_TKc. 1 hit.
[Graphical view ]
SUPFAMi SSF56112. SSF56112. 1 hit.
PROSITEi PS00107. PROTEIN_KINASE_ATP. 1 hit.
PS50011. PROTEIN_KINASE_DOM. 1 hit.
PS00108. PROTEIN_KINASE_ST. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Identification of a novel developmentally regulated C type cyclin-dependent kinase in rice plants."
    Huang Y.W., Huang H.J.
    Submitted (JUN-2003) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA].
  2. "The genome sequence and structure of rice chromosome 1."
    Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.
    , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.
    Nature 420:312-316(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. Nipponbare.
  4. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. Nipponbare.
  5. "Genome-wide identification and expression analysis of rice cell cycle genes."
    Guo J., Song J., Wang F., Zhang X.S.
    Plant Mol. Biol. 64:349-360(2007) [PubMed] [Europe PMC] [Abstract]
    Cited for: INDUCTION, GENE FAMILY.

Entry informationi

Entry nameiCDKC2_ORYSJ
AccessioniPrimary (citable) accession number: Q5JK68
Secondary accession number(s): Q5K4U5, Q7Y0V2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 24, 2007
Last sequence update: February 15, 2005
Last modified: October 29, 2014
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3