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Protein

50S ribosomal protein L13

Gene

rpl13

Organism
Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1))
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L13
Gene namesi
Name:rpl13
Ordered Locus Names:TK1501
OrganismiThermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1))
Taxonomic identifieri69014 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaeThermococcus
Proteomesi
  • UP000000536 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002618501 – 14250S ribosomal protein L13Add BLAST142

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi69014.TK1501.

Structurei

3D structure databases

ProteinModelPortaliQ5JJF6.
SMRiQ5JJF6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL13 family.

Phylogenomic databases

eggNOGiarCOG04242. Archaea.
COG0102. LUCA.
HOGENOMiHOG000225287.
InParanoidiQ5JJF6.
KOiK02871.
OMAiRYHNFLH.
OrthoDBiPOG093Z0DQ4.

Family and domain databases

CDDicd00392. Ribosomal_L13. 1 hit.
Gene3Di3.90.1180.10. 1 hit.
HAMAPiMF_01366. Ribosomal_L13. 1 hit.
InterProiView protein in InterPro
IPR005822. Ribosomal_L13.
IPR023563. Ribosomal_L13_CS.
IPR005755. Ribosomal_L13_euk/arc.
IPR036899. Ribosomal_L13_sf.
PANTHERiPTHR11545. PTHR11545. 1 hit.
PTHR11545:SF3. PTHR11545:SF3. 1 hit.
PfamiView protein in Pfam
PF00572. Ribosomal_L13. 1 hit.
PIRSFiPIRSF002181. Ribosomal_L13. 1 hit.
SUPFAMiSSF52161. SSF52161. 1 hit.
TIGRFAMsiTIGR01077. L13_A_E. 1 hit.
PROSITEiView protein in PROSITE
PS00783. RIBOSOMAL_L13. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5JJF6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRIINAEGLI LGRLASKVAK MLLEGEEVVI VNAEKAIITG NREDIFAKYK
60 70 80 90 100
QRTELRTRTN PRRGPFYPKR SDEIVRRTVR GMLPWKTDRG RKAFKRLKVY
110 120 130 140
VGVPKEFEGK EFETISEAHM SRLATPKYVT VGEVAKFLGG KF
Length:142
Mass (Da):16,284
Last modified:February 15, 2005 - v1
Checksum:iC58B39550CD1CD48
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP006878 Genomic DNA. Translation: BAD85690.1.
RefSeqiWP_011250452.1. NC_006624.1.

Genome annotation databases

EnsemblBacteriaiBAD85690; BAD85690; TK1501.
GeneIDi3234826.
KEGGitko:TK1501.
PATRICifig|69014.16.peg.1461.

Similar proteinsi

Entry informationi

Entry nameiRL13_THEKO
AccessioniPrimary (citable) accession number: Q5JJF6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: February 15, 2005
Last modified: October 25, 2017
This is version 76 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families