Q5JII7 (Q5JII7_PYRKO) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Hydrogenase expression/formation protein HypE EMBL BAD86182.1

Gene names

Ordered Locus Names:

TK1993

Organism

Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Thermococcus kodakaraensis (strain KOD1))

Taxonomic identifier

69014 [NCBI]

Taxonomic lineage

Archaea › Euryarchaeota › Thermococci › Thermococcales › Thermococcaceae › Thermococcus

Protein attributes

Sequence length	338 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Technical term	3D-structure PDB 2Z1F PDB 2Z1E Complete proteome Reference proteome
Gene Ontology (GO)
Molecular function	catalytic activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q5JII7 [UniParc]. Last modified February 15, 2005. Version 1. Checksum: 240003AA7F119471	FASTA	338	35,911
	10 20 30 40 50 60 MGEKIKLEHG AGGEIMEELL RDVILKTLTL KSAGGIGLDA LDDGATIPFG DKHIVFTIDG 70 80 90 100 110 120 HTVKPLFFPG GDIGRLAVSG TVNDLAVMGA EPIALANSMI IGEGLDMEVL KRVLKSMDET 130 140 150 160 170 180 AREVPVPIVT GDTKVVEDKI EMFVITAGIG IAEHPVSDAG AKVGDAVLVS GTIGDHGIAL 190 200 210 220 230 240 MSHREGIAFE TELKSDVAPI WDVVKAVAET IGWENIHAMK DPTRAGLSNA LNEIARKSNV 250 260 270 280 290 300 GILVREADIP IRPEVRAASE MLGISPYDVA NEGKVVMVVA REYAEEALEA MRKTEKGRNA 310 320 330 AIIGEVIADY RGKVLLETGI GGKRFMEPPE GDPVPRIC

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes." Fukui T., Atomi H., Kanai T., Matsumi R., Fujiwara S., Imanaka T. Genome Res. 15:352-363(2005) [PubMed: 15710748] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-918 / JCM 12380 / KOD1 and KOD1.
[2]	"Crystal structures of [NiFe] hydrogenase maturation proteins HypC, HypD, and HypE: insights into cyanation reaction by thiol redox signaling." Watanabe S., Matsumi R., Arai T., Atomi H., Imanaka T., Miki K. Mol. Cell 27:29-40(2007) [PubMed: 17612488] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (1.55 ANGSTROMS).

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AP006878 Genomic DNA. Translation: BAD86182.1.

RefSeq

YP_184406.1. NC_006624.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2Z1E	X-ray	1.55	A	1-338	[»]
2Z1F	X-ray	1.70	A	1-338	[»]

ProteinModelPortal

Q5JII7.

SMR

Q5JII7. Positions 41-334.

ModBase

Search...

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

EnsemblBacteria

EBPYRT00000007161; EBPYRP00000006942; EBPYRG00000007160.

GeneID

3235054.

GenomeReviews

Gene locus TK1993 in contig AP006878_GR.

KEGG

tko:TK1993.

NMPDR

fig|69014.3.peg.1843.

Phylogenomic databases

eggNOG

arNOG04261.

GeneTree

EBGT00050000022555.

HOGENOM

HBG287946.

OMA

AMRDPTR.

PhylomeDB

Q5JII7.

ProtClustDB

CLSK689591.

Enzyme and pathway databases

BioCyc

TKOD69014:TK1993-MONOMER.

Family and domain databases

InterPro

IPR000728. AIR_synth.
IPR010918. AIR_synth_C.
IPR011854. HypE.
IPR016188. PurM_N-like.
[Graphical view]

KO

K04655.

Pfam

PF00586. AIRS. 1 hit.
PF02769. AIRS_C. 1 hit.
[Graphical view]

PIRSF

PIRSF005644. Hdrgns_mtr_HypE. 1 hit.

SUPFAM

SSF56042. AIR_synth_C. 1 hit.
SSF55326. PurM_N-like. 1 hit.

TIGRFAMs

TIGR02124. HypE. 1 hit.

ProtoNet

Search...

Entry information

Entry name

Q5JII7_PYRKO

Accession

Primary (citable) accession number: Q5JII7

Entry history

Integrated into UniProtKB/TrEMBL:	February 15, 2005
Last sequence update:	February 15, 2005
Last modified:	November 16, 2011
This is version 42 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)