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Q5JIH4 (Q5JIH4_THEKO) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 60. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
Gene names
Ordered Locus Names:TK2007 EMBL BAD86196.1
OrganismThermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1)) [Reference proteome] [HAMAP]
Taxonomic identifier69014 [NCBI]
Taxonomic lineageArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaeThermococcus

Protein attributes

Sequence length248 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Ontologies

Keywords
   LigandNucleotide-binding PDB 3VX3
   Technical term3D-structure PDB 3VX3
Complete proteome
Reference proteome
Gene Ontology (GO)
   Molecular_functionnucleotide binding

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding28 – 358ADP PDB 3VX3
Nucleotide binding217 – 2193ADP PDB 3VX3

Sites

Binding site1601ADP PDB 3VX3
Binding site1871ADP PDB 3VX3
Binding site2231ADP PDB 3VX3

Sequences

Sequence LengthMass (Da)Tools
Q5JIH4 [UniParc].

Last modified February 15, 2005. Version 1.
Checksum: D0E5F945B639C2B4

FASTA24827,586
        10         20         30         40         50         60 
MNAIDPREIA INARLEGVKR IIPVVSGKGG VGKSLVSTTL ALVLAEKGYR VGLLDLDFHG 

        70         80         90        100        110        120 
ASDHVILGFE PKEFPEEDRG VVPPTVHGIK FMTIAYYTED RPTPLRGKEI SDALIELLTI 

       130        140        150        160        170        180 
TRWDELDYLV IDMPPGLGDQ LLDVLRFLKR GEFLVVATPS KLSLNVVRKL IELLKEEGHK 

       190        200        210        220        230        240 
VIGVVENMKL RSEQLDDEKD VEKLAEEFGV PYLVGIPFYP DLDAKVGNVE ELMKTEFAGK 


VRELAGRL 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes."
Fukui T., Atomi H., Kanai T., Matsumi R., Fujiwara S., Imanaka T.
Genome Res. 15:352-363(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC BAA-918 / JCM 12380 / KOD1.
[2]"Identification and structure of a novel archaeal HypB for [NiFe] hydrogenase maturation."
Sasaki D., Watanabe S., Matsumi R., Shoji T., Yasukochi A., Tagashira K., Fukuda W., Kanai T., Atomi H., Imanaka T., Miki K.
J. Mol. Biol. 425:1627-1640(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.10 ANGSTROMS) IN COMPLEX WITH ADP.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP006878 Genomic DNA. Translation: BAD86196.1.
RefSeqYP_184420.1. NC_006624.1.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
3VX3X-ray2.10A/B1-248[»]
ProteinModelPortalQ5JIH4.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING69014.TK2007.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAD86196; BAD86196; TK2007.
GeneID3234884.
KEGGtko:TK2007.

Phylogenomic databases

eggNOGCOG0489.
HOGENOMHOG000079916.
KOK03593.
OMAIIENMKL.

Enzyme and pathway databases

BioCycTKOD69014:GH72-2049-MONOMER.

Family and domain databases

Gene3D3.40.50.300. 1 hit.
InterProIPR002586. CobQ/CobB/MinD/ParA_Nub-bd_dom.
IPR019591. Mrp/NBP35_ATP-bd.
IPR027417. P-loop_NTPase.
[Graphical view]
PANTHERPTHR23264. PTHR23264. 1 hit.
PfamPF01656. CbiA. 1 hit.
[Graphical view]
SUPFAMSSF52540. SSF52540. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ5JIH4_THEKO
AccessionPrimary (citable) accession number: Q5JIH4
Entry history
Integrated into UniProtKB/TrEMBL: February 15, 2005
Last sequence update: February 15, 2005
Last modified: July 9, 2014
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)