Q5JI52 (Q5JI52_PYRKO) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA-directed RNA polymerase, subunit F EMBL BAD85090.1

Gene names

Ordered Locus Names:

TK0901

Organism

Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Thermococcus kodakaraensis (strain KOD1))

Taxonomic identifier

69014 [NCBI]

Taxonomic lineage

Archaea › Euryarchaeota › Thermococci › Thermococcales › Thermococcaceae › Thermococcus

Protein attributes

Sequence length	115 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Biological process	Transcription
Cellular component	DNA-directed RNA polymerase EMBL BAD85090.1
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Molecular function	DNA-directed RNA polymerase activity Inferred from electronic annotation. Source: UniProtKB-KW nucleotide binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q5JI52 [UniParc]. Last modified February 15, 2005. Version 1. Checksum: 1E6C6E7F2C59C124	FASTA	115	13,569
	10 20 30 40 50 60 MIGRKKLEEH YITIAEAKEL LERRHAEGLA ENPEEPMFYE ARVSLEHAER FAKLKPEQAR 70 80 90 100 110 ELKEKLMGLF DWINERIAAK LVDILPEDYL DIRVIFAKEE YMPTPEEAEE IIKVS

References

[1]

"Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes." Fukui T., Atomi H., Kanai T., Matsumi R., Fujiwara S., Imanaka T. Genome Res. 15:352-363(2005) [PubMed: 15710748] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-918 / JCM 12380 / KOD1 and KOD1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP006878 Genomic DNA. Translation: BAD85090.1.
RefSeq	YP_183314.1. NC_006624.1.
3D structure databases
ProteinModelPortal	Q5JI52.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	EBPYRT00000007399; EBPYRP00000007180; EBPYRG00000007398.
GeneID	3235061.
GenomeReviews	Gene locus TK0901 in contig AP006878_GR.
KEGG	tko:TK0901.
NMPDR	fig|69014.3.peg.1430.
Phylogenomic databases
eggNOG	arNOG11473.
GeneTree	EBGT00050000022521.
HOGENOM	HBG321515.
OMA	CALDYLQ.
PhylomeDB	Q5JI52.
ProtClustDB	PRK14981.
Enzyme and pathway databases
BioCyc	TKOD69014:TK0901-MONOMER.
Family and domain databases
InterPro	IPR010997. HRDC-like. IPR015906. HRDC-like_sub1. IPR015907. HRDC-like_sub2. IPR010924. RNA_pol_F_arc. IPR005574. RNA_pol_II_Rpb4. [Graphical view]
Gene3D	G3DSA:1.10.150.80. HRDC-like_sub1. 1 hit. G3DSA:1.10.287.420. HRDC-like_sub2. 1 hit.
KO	K03051.
Pfam	PF03874. RNA_pol_Rpb4. 1 hit. [Graphical view]
PIRSF	PIRSF005053. RNA_pol_F_arch. 1 hit.
SUPFAM	SSF47819. HRDC_like. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q5JI52_PYRKO

Accession

Primary (citable) accession number: Q5JI52

Entry history

Integrated into UniProtKB/TrEMBL:	February 15, 2005
Last sequence update:	February 15, 2005
Last modified:	December 14, 2011
This is version 42 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)