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Protein

RNA-binding protein AU-1

Gene

aubA

Organism
Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1))
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Binds to RNA in loop regions with AU-rich sequences.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRNA-binding

Enzyme and pathway databases

BioCyciTKOD69014:G1G2A-2247-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
RNA-binding protein AU-1UniRule annotation
Alternative name(s):
AU-binding proteinUniRule annotation
Gene namesi
Name:aubAUniRule annotation
Ordered Locus Names:TK2227
OrganismiThermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1))
Taxonomic identifieri69014 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaeThermococcus
Proteomesi
  • UP000000536 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003342091 – 471RNA-binding protein AU-1Add BLAST471

Proteomic databases

PRIDEiQ5JHN3

Interactioni

Protein-protein interaction databases

STRINGi69014.TK2227

Structurei

3D structure databases

ProteinModelPortaliQ5JHN3
SMRiQ5JHN3
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the AubA family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04307 Archaea
COG1530 LUCA
HOGENOMiHOG000034229
InParanoidiQ5JHN3
KOiK22469
OMAiGTYVNVC
OrthoDBiPOG093Z03XQ

Family and domain databases

Gene3Di2.40.380.10, 1 hit
HAMAPiMF_01910 RNA_binding_AU_1, 1 hit
InterProiView protein in InterPro
IPR007295 DUF402
IPR035930 FomD-like_sf
IPR016730 RNA-bd_AU-1
IPR019307 RNA-bd_AU-1/RNase_E/G
IPR022967 S1_dom
PfamiView protein in Pfam
PF04167 DUF402, 1 hit
PF10150 RNase_E_G, 1 hit
PIRSFiPIRSF018644 RNA-binding_FAU-1, 1 hit
SMARTiView protein in SMART
SM00316 S1, 1 hit
SUPFAMiSSF159234 SSF159234, 1 hit

Sequencei

Sequence statusi: Complete.

Q5JHN3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSTDTRPTVR IRGIYSTALT KLFLDRGFGI SQPSNKIVER FGLEKTYDDF
60 70 80 90 100
DVDIYDKKDR HGVVLVGDAV EEAKKVLEEE LIDVFFRRLP YQLYGIYKGL
110 120 130 140 150
VVKIDEKYVY VDLGSAIGTI PRKDLPKAVE GDEILVQVKK HNLLPHLSTT
160 170 180 190 200
LTIPGDYAVL IPKPIGAQRH VKISRKIRDN QERERLRILG LSIDLGKWGV
210 220 230 240 250
LWRTAAAYKD WNLLRDEIVR LSKLADRLAK ADTYFAPSLI IEGRNIYEVE
260 270 280 290 300
FGGGAKRKLD EIRNKVVPTV DGHHQLKAKD PELGFAVEIA EGILSKVPGQ
310 320 330 340 350
RVKVNQGFWE ALVENKGPKK GWLFTLEHVK PDGQRIRLGP GEVLEVSHNP
360 370 380 390 400
LRVTIKRHLK PGKFYDGLEL PIEFGDYAIT ELEAGKWWFV HRYYDKNGNL
410 420 430 440 450
KGEYYNINTP VEIYPDGARY VDLEVDIVKW PDGKKEIIDQ EELKEHYEEG
460 470
IISEKLYRAV LRITQEVFER V
Length:471
Mass (Da):54,070
Last modified:February 15, 2005 - v1
Checksum:iC86A1675A4EE7A98
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP006878 Genomic DNA Translation: BAD86416.1
RefSeqiWP_011251177.1, NC_006624.1

Genome annotation databases

EnsemblBacteriaiBAD86416; BAD86416; TK2227
GeneIDi3235430
KEGGitko:TK2227
PATRICifig|69014.16.peg.2182

Similar proteinsi

Entry informationi

Entry nameiAUBA_THEKO
AccessioniPrimary (citable) accession number: Q5JHN3
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 20, 2008
Last sequence update: February 15, 2005
Last modified: May 23, 2018
This is version 81 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

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