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Protein

RNA-binding protein AU-1

Gene

aubA

Organism
Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1))
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Binds to RNA in loop regions with AU-rich sequences.UniRule annotation

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
RNA-binding protein AU-1UniRule annotation
Alternative name(s):
AU-binding proteinUniRule annotation
Gene namesi
Name:aubAUniRule annotation
Ordered Locus Names:TK2227
OrganismiThermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1))
Taxonomic identifieri69014 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaeThermococcus
Proteomesi
  • UP000000536 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003342091 – 471RNA-binding protein AU-1Add BLAST471

Interactioni

Protein-protein interaction databases

STRINGi69014.TK2227.

Structurei

3D structure databases

ProteinModelPortaliQ5JHN3.
SMRiQ5JHN3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the AubA family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04307. Archaea.
COG1530. LUCA.
HOGENOMiHOG000034229.
InParanoidiQ5JHN3.
OMAiGTYVNVC.

Family and domain databases

Gene3Di2.40.380.10. 1 hit.
HAMAPiMF_01910. RNA_binding_AU_1. 1 hit.
InterProiIPR007295. DUF402.
IPR016730. RNA-bd_AU-1.
IPR019307. RNA-bd_AU-1/RNase_E/G.
IPR022967. S1_dom.
[Graphical view]
PfamiPF04167. DUF402. 1 hit.
PF10150. RNase_E_G. 1 hit.
[Graphical view]
PIRSFiPIRSF018644. RNA-binding_FAU-1. 1 hit.
SMARTiSM00316. S1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5JHN3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSTDTRPTVR IRGIYSTALT KLFLDRGFGI SQPSNKIVER FGLEKTYDDF
60 70 80 90 100
DVDIYDKKDR HGVVLVGDAV EEAKKVLEEE LIDVFFRRLP YQLYGIYKGL
110 120 130 140 150
VVKIDEKYVY VDLGSAIGTI PRKDLPKAVE GDEILVQVKK HNLLPHLSTT
160 170 180 190 200
LTIPGDYAVL IPKPIGAQRH VKISRKIRDN QERERLRILG LSIDLGKWGV
210 220 230 240 250
LWRTAAAYKD WNLLRDEIVR LSKLADRLAK ADTYFAPSLI IEGRNIYEVE
260 270 280 290 300
FGGGAKRKLD EIRNKVVPTV DGHHQLKAKD PELGFAVEIA EGILSKVPGQ
310 320 330 340 350
RVKVNQGFWE ALVENKGPKK GWLFTLEHVK PDGQRIRLGP GEVLEVSHNP
360 370 380 390 400
LRVTIKRHLK PGKFYDGLEL PIEFGDYAIT ELEAGKWWFV HRYYDKNGNL
410 420 430 440 450
KGEYYNINTP VEIYPDGARY VDLEVDIVKW PDGKKEIIDQ EELKEHYEEG
460 470
IISEKLYRAV LRITQEVFER V
Length:471
Mass (Da):54,070
Last modified:February 15, 2005 - v1
Checksum:iC86A1675A4EE7A98
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP006878 Genomic DNA. Translation: BAD86416.1.
RefSeqiWP_011251177.1. NC_006624.1.

Genome annotation databases

EnsemblBacteriaiBAD86416; BAD86416; TK2227.
GeneIDi3235430.
KEGGitko:TK2227.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP006878 Genomic DNA. Translation: BAD86416.1.
RefSeqiWP_011251177.1. NC_006624.1.

3D structure databases

ProteinModelPortaliQ5JHN3.
SMRiQ5JHN3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi69014.TK2227.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAD86416; BAD86416; TK2227.
GeneIDi3235430.
KEGGitko:TK2227.

Phylogenomic databases

eggNOGiarCOG04307. Archaea.
COG1530. LUCA.
HOGENOMiHOG000034229.
InParanoidiQ5JHN3.
OMAiGTYVNVC.

Family and domain databases

Gene3Di2.40.380.10. 1 hit.
HAMAPiMF_01910. RNA_binding_AU_1. 1 hit.
InterProiIPR007295. DUF402.
IPR016730. RNA-bd_AU-1.
IPR019307. RNA-bd_AU-1/RNase_E/G.
IPR022967. S1_dom.
[Graphical view]
PfamiPF04167. DUF402. 1 hit.
PF10150. RNase_E_G. 1 hit.
[Graphical view]
PIRSFiPIRSF018644. RNA-binding_FAU-1. 1 hit.
SMARTiSM00316. S1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiAUBA_THEKO
AccessioniPrimary (citable) accession number: Q5JHN3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 20, 2008
Last sequence update: February 15, 2005
Last modified: November 2, 2016
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.