Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

UPF0292 protein TK1411

Gene

TK1411

Organism
Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1))
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Cofactori

Mg2+UniRule annotationNote: Binds two Mg2+ per subunit.UniRule annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi26 – 261Magnesium 1; catalyticUniRule annotation
Metal bindingi69 – 691Magnesium 1; catalyticUniRule annotation
Metal bindingi69 – 691Magnesium 2UniRule annotation
Metal bindingi71 – 711Magnesium 2UniRule annotation

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

Magnesium, Metal-binding

Enzyme and pathway databases

BioCyciTKOD69014:GH72-1432-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0292 protein TK1411UniRule annotation
Gene namesi
Ordered Locus Names:TK1411
OrganismiThermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1))
Taxonomic identifieri69014 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaeThermococcus
Proteomesi
  • UP000000536 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 133133UPF0292 protein TK1411PRO_0000143957Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi69014.TK1411.

Structurei

3D structure databases

ProteinModelPortaliQ5JH13.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini20 – 10081ToprimUniRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the UPF0292 family.UniRule annotation
Contains 1 Toprim domain.UniRule annotation

Phylogenomic databases

eggNOGiarCOG01486. Archaea.
COG1658. LUCA.
HOGENOMiHOG000230374.
InParanoidiQ5JH13.
OMAiMYAENYK.

Family and domain databases

HAMAPiMF_01095. UPF0292. 1 hit.
InterProiIPR006171. Toprim_domain.
IPR022972. UPF0292.
[Graphical view]
PfamiPF01751. Toprim. 1 hit.
[Graphical view]
SMARTiSM00493. TOPRIM. 1 hit.
[Graphical view]
PROSITEiPS50880. TOPRIM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5JH13-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYPENYKRFL ELIDKLREFE GALIVEGLRD EVALRNLGVR AEIIRLSRLP
60 70 80 90 100
LSEVALIASS HKEVMILTDF DKKGEELAKK LLNYLAGYPC SVDIETWKEL
110 120 130
RKLVRKDIKG VEDLYGLYLR VVSVSDPLLE GIQ
Length:133
Mass (Da):15,293
Last modified:February 15, 2005 - v1
Checksum:i29D88E2FF510BA1C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP006878 Genomic DNA. Translation: BAD85600.1.
RefSeqiWP_011250362.1. NC_006624.1.

Genome annotation databases

EnsemblBacteriaiBAD85600; BAD85600; TK1411.
GeneIDi3234728.
KEGGitko:TK1411.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP006878 Genomic DNA. Translation: BAD85600.1.
RefSeqiWP_011250362.1. NC_006624.1.

3D structure databases

ProteinModelPortaliQ5JH13.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi69014.TK1411.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAD85600; BAD85600; TK1411.
GeneIDi3234728.
KEGGitko:TK1411.

Phylogenomic databases

eggNOGiarCOG01486. Archaea.
COG1658. LUCA.
HOGENOMiHOG000230374.
InParanoidiQ5JH13.
OMAiMYAENYK.

Enzyme and pathway databases

BioCyciTKOD69014:GH72-1432-MONOMER.

Family and domain databases

HAMAPiMF_01095. UPF0292. 1 hit.
InterProiIPR006171. Toprim_domain.
IPR022972. UPF0292.
[Graphical view]
PfamiPF01751. Toprim. 1 hit.
[Graphical view]
SMARTiSM00493. TOPRIM. 1 hit.
[Graphical view]
PROSITEiPS50880. TOPRIM. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiY1411_THEKO
AccessioniPrimary (citable) accession number: Q5JH13
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 12, 2005
Last sequence update: February 15, 2005
Last modified: November 11, 2015
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.