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Protein

UPF0292 protein TK1411

Gene

TK1411

Organism
Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1))
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Cofactori

Mg2+UniRule annotationNote: Binds two Mg2+ per subunit.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi26Magnesium 1; catalyticUniRule annotation1
Metal bindingi69Magnesium 1; catalyticUniRule annotation1
Metal bindingi69Magnesium 2UniRule annotation1
Metal bindingi71Magnesium 2UniRule annotation1

GO - Molecular functioni

Keywordsi

LigandMagnesium, Metal-binding

Enzyme and pathway databases

BioCyciTKOD69014:GH72-1433-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0292 protein TK1411UniRule annotation
Gene namesi
Ordered Locus Names:TK1411
OrganismiThermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1))
Taxonomic identifieri69014 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaeThermococcus
Proteomesi
  • UP000000536 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001439571 – 133UPF0292 protein TK1411Add BLAST133

Interactioni

Protein-protein interaction databases

STRINGi69014.TK1411.

Structurei

3D structure databases

ProteinModelPortaliQ5JH13.
SMRiQ5JH13.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini20 – 100ToprimUniRule annotationAdd BLAST81

Sequence similaritiesi

Belongs to the UPF0292 family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG01486. Archaea.
COG1658. LUCA.
HOGENOMiHOG000230374.
InParanoidiQ5JH13.
OMAiMILTDFD.
OrthoDBiPOG093Z0EJS.

Family and domain databases

CDDicd01027. TOPRIM_RNase_M5_like. 1 hit.
HAMAPiMF_01095. UPF0292. 1 hit.
InterProiView protein in InterPro
IPR006171. TOPRIM_domain.
IPR034141. TOPRIM_RNase_M5-like.
IPR022972. UPF0292.
PfamiView protein in Pfam
PF01751. Toprim. 1 hit.
SMARTiView protein in SMART
SM00493. TOPRIM. 1 hit.
PROSITEiView protein in PROSITE
PS50880. TOPRIM. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5JH13-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYPENYKRFL ELIDKLREFE GALIVEGLRD EVALRNLGVR AEIIRLSRLP
60 70 80 90 100
LSEVALIASS HKEVMILTDF DKKGEELAKK LLNYLAGYPC SVDIETWKEL
110 120 130
RKLVRKDIKG VEDLYGLYLR VVSVSDPLLE GIQ
Length:133
Mass (Da):15,293
Last modified:February 15, 2005 - v1
Checksum:i29D88E2FF510BA1C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP006878 Genomic DNA. Translation: BAD85600.1.
RefSeqiWP_011250362.1. NC_006624.1.

Genome annotation databases

EnsemblBacteriaiBAD85600; BAD85600; TK1411.
GeneIDi3234728.
KEGGitko:TK1411.
PATRICifig|69014.16.peg.1373.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiY1411_THEKO
AccessioniPrimary (citable) accession number: Q5JH13
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 12, 2005
Last sequence update: February 15, 2005
Last modified: June 7, 2017
This is version 71 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries