Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

UPF0201 protein TK1335

Gene

TK1335

Organism
Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1))
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciTKOD69014:GH72-1355-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0201 protein TK1335UniRule annotation
Gene namesi
Ordered Locus Names:TK1335
OrganismiThermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1))
Taxonomic identifieri69014 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaeThermococcus
Proteomesi
  • UP000000536 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 138138UPF0201 protein TK1335PRO_0000094517Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi69014.TK1335.

Structurei

3D structure databases

ProteinModelPortaliQ5JGV3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0201 family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG01043. Archaea.
COG1931. LUCA.
HOGENOMiHOG000224697.
InParanoidiQ5JGV3.
KOiK09736.
OMAiEVEAYVY.

Family and domain databases

Gene3Di3.30.1440.10. 1 hit.
HAMAPiMF_01112. UPF0201. 1 hit.
InterProiIPR022803. Ribosomal_L5_domain.
IPR002739. UPF0201.
[Graphical view]
PfamiPF01877. RNA_binding. 1 hit.
[Graphical view]
SUPFAMiSSF55282. SSF55282. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5JGV3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSELFEEVEV EAYVYPTEDI EKVKKAMLNL IPDLEFEAFD RGDYIILTAK
60 70 80 90 100
TRSRKALSRL YELFRGQAIL DTARSFLEEG YFGEEIIIKV NKQAAYAGVV
110 120 130
NFNEESPLGP ITIIIRTKDP QRLMKWLAPR TKDGVPIE
Length:138
Mass (Da):15,875
Last modified:February 15, 2005 - v1
Checksum:i6346CB52E78E308F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP006878 Genomic DNA. Translation: BAD85524.1.
RefSeqiWP_011250286.1. NC_006624.1.

Genome annotation databases

EnsemblBacteriaiBAD85524; BAD85524; TK1335.
GeneIDi3235747.
KEGGitko:TK1335.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP006878 Genomic DNA. Translation: BAD85524.1.
RefSeqiWP_011250286.1. NC_006624.1.

3D structure databases

ProteinModelPortaliQ5JGV3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi69014.TK1335.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAD85524; BAD85524; TK1335.
GeneIDi3235747.
KEGGitko:TK1335.

Phylogenomic databases

eggNOGiarCOG01043. Archaea.
COG1931. LUCA.
HOGENOMiHOG000224697.
InParanoidiQ5JGV3.
KOiK09736.
OMAiEVEAYVY.

Enzyme and pathway databases

BioCyciTKOD69014:GH72-1355-MONOMER.

Family and domain databases

Gene3Di3.30.1440.10. 1 hit.
HAMAPiMF_01112. UPF0201. 1 hit.
InterProiIPR022803. Ribosomal_L5_domain.
IPR002739. UPF0201.
[Graphical view]
PfamiPF01877. RNA_binding. 1 hit.
[Graphical view]
SUPFAMiSSF55282. SSF55282. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiY1335_THEKO
AccessioniPrimary (citable) accession number: Q5JGV3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 30, 2005
Last sequence update: February 15, 2005
Last modified: November 11, 2015
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.