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Q5JGH7

- SYR_THEKO

UniProt

Q5JGH7 - SYR_THEKO

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Protein

Arginine--tRNA ligase

Gene

argS

Organism
Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1))
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg).UniRule annotation

GO - Molecular functioni

  1. arginine-tRNA ligase activity Source: UniProtKB-HAMAP
  2. ATP binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. arginyl-tRNA aminoacylation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Aminoacyl-tRNA synthetase, Ligase

Keywords - Biological processi

Protein biosynthesis

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciTKOD69014:GH72-1251-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Arginine--tRNA ligaseUniRule annotation (EC:6.1.1.19UniRule annotation)
Alternative name(s):
Arginyl-tRNA synthetaseUniRule annotation
Short name:
ArgRSUniRule annotation
Gene namesi
Name:argSUniRule annotation
Ordered Locus Names:TK1235
OrganismiThermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1))
Taxonomic identifieri69014 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaeThermococcus
ProteomesiUP000000536: Chromosome

Subcellular locationi

Cytoplasm UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 642642Arginine--tRNA ligasePRO_0000151654Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi69014.TK1235.

Structurei

3D structure databases

ProteinModelPortaliQ5JGH7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi133 – 14311"HIGH" regionAdd
BLAST

Sequence similaritiesi

Belongs to the class-I aminoacyl-tRNA synthetase family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0018.
HOGENOMiHOG000247213.
InParanoidiQ5JGH7.
KOiK01887.
OMAiMEHMGFG.

Family and domain databases

Gene3Di1.10.730.10. 1 hit.
3.30.1360.70. 1 hit.
3.40.50.620. 1 hit.
HAMAPiMF_00123. Arg_tRNA_synth.
InterProiIPR001412. aa-tRNA-synth_I_CS.
IPR001278. Arg-tRNA-ligase.
IPR005148. Arg-tRNA-synth_N.
IPR008909. DALR_anticod-bd.
IPR014729. Rossmann-like_a/b/a_fold.
IPR009080. tRNAsynth_1a_anticodon-bd.
[Graphical view]
PANTHERiPTHR11956. PTHR11956. 1 hit.
PfamiPF03485. Arg_tRNA_synt_N. 1 hit.
PF05746. DALR_1. 1 hit.
PF00750. tRNA-synt_1d. 2 hits.
[Graphical view]
PRINTSiPR01038. TRNASYNTHARG.
SMARTiSM01016. Arg_tRNA_synt_N. 1 hit.
SM00836. DALR_1. 1 hit.
[Graphical view]
SUPFAMiSSF47323. SSF47323. 1 hit.
SSF55190. SSF55190. 1 hit.
TIGRFAMsiTIGR00456. argS. 1 hit.
PROSITEiPS00178. AA_TRNA_LIGASE_I. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5JGH7-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MVYKEVQERV RLALRQALDE MLHEAGKEWD GEITFDDTPS IELGDFGTAV
60 70 80 90 100
SFQLARVFRK APKFIAEELV GRVKEKLPEE IRDVKAVNGY INFYLDYEFF
110 120 130 140 150
GKALVREILE KGEKYGESEL GSGKKVIVEH TSVNPTKPLH MGHARNAVLG
160 170 180 190 200
DTMARIMRKL GYTVEVQNYI DDLGVQFAQV LWGYLNLKEE FERIEAELRE
210 220 230 240 250
KGLKEDFIDH VMGLLYVEVN KKLEENPEVD KEVRELMKKL EEGDNEIAEV
260 270 280 290 300
GRKLAERVVR AQMLTTYRMG ITYDLLSWES DIMKSGIFGE AYGLIEKNEN
310 320 330 340 350
FFWATEGKYK GAFVMDLRKL FPDMKNPFLV LRRSDGTATY TGKDIAYHLW
360 370 380 390 400
KFGKVKADML YKLWDRVEDH ETWTTAPDGK EMPGKFGRAD IVINVIGAEQ
410 420 430 440 450
KHPQMAIKYA LQLLGFEDAA ENFHHLAYEH VVRPEGSFSG RKGTWVGFTV
460 470 480 490 500
DEVLNEAVQR ARELVEQKNP NLSDEEKDEI AEAVGVGAVR YNLVKYSPDK
510 520 530 540 550
VITFRWEDVL NFEGDSAPYL QYAHARCASI LRKAEESGVE TDWNALLEKA
560 570 580 590 600
DFSKLTNREK ELIKFLAKFP EVLESAGRDV KPHLVPAYLN ELASLFNRFY
610 620 630 640
MDHPVLKAEE GIREERLLLV LAVKQVLRNG LDVLGIKAPE RM
Length:642
Mass (Da):73,657
Last modified:February 15, 2005 - v1
Checksum:iFDE442F1E63B933A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP006878 Genomic DNA. Translation: BAD85424.1.
RefSeqiYP_183648.1. NC_006624.1.

Genome annotation databases

EnsemblBacteriaiBAD85424; BAD85424; TK1235.
GeneIDi3234303.
KEGGitko:TK1235.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP006878 Genomic DNA. Translation: BAD85424.1 .
RefSeqi YP_183648.1. NC_006624.1.

3D structure databases

ProteinModelPortali Q5JGH7.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 69014.TK1235.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAD85424 ; BAD85424 ; TK1235 .
GeneIDi 3234303.
KEGGi tko:TK1235.

Phylogenomic databases

eggNOGi COG0018.
HOGENOMi HOG000247213.
InParanoidi Q5JGH7.
KOi K01887.
OMAi MEHMGFG.

Enzyme and pathway databases

BioCyci TKOD69014:GH72-1251-MONOMER.

Family and domain databases

Gene3Di 1.10.730.10. 1 hit.
3.30.1360.70. 1 hit.
3.40.50.620. 1 hit.
HAMAPi MF_00123. Arg_tRNA_synth.
InterProi IPR001412. aa-tRNA-synth_I_CS.
IPR001278. Arg-tRNA-ligase.
IPR005148. Arg-tRNA-synth_N.
IPR008909. DALR_anticod-bd.
IPR014729. Rossmann-like_a/b/a_fold.
IPR009080. tRNAsynth_1a_anticodon-bd.
[Graphical view ]
PANTHERi PTHR11956. PTHR11956. 1 hit.
Pfami PF03485. Arg_tRNA_synt_N. 1 hit.
PF05746. DALR_1. 1 hit.
PF00750. tRNA-synt_1d. 2 hits.
[Graphical view ]
PRINTSi PR01038. TRNASYNTHARG.
SMARTi SM01016. Arg_tRNA_synt_N. 1 hit.
SM00836. DALR_1. 1 hit.
[Graphical view ]
SUPFAMi SSF47323. SSF47323. 1 hit.
SSF55190. SSF55190. 1 hit.
TIGRFAMsi TIGR00456. argS. 1 hit.
PROSITEi PS00178. AA_TRNA_LIGASE_I. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes."
    Fukui T., Atomi H., Kanai T., Matsumi R., Fujiwara S., Imanaka T.
    Genome Res. 15:352-363(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-918 / JCM 12380 / KOD1.

Entry informationi

Entry nameiSYR_THEKO
AccessioniPrimary (citable) accession number: Q5JGH7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 10, 2005
Last sequence update: February 15, 2005
Last modified: October 29, 2014
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Aminoacyl-tRNA synthetases
    List of aminoacyl-tRNA synthetase entries
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3