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Protein
Submitted name:

Alpha-amylase, GH13 family

Gene

TK1884

Organism
Thermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1))
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. calcium ion binding Source: InterPro
  2. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciTKOD69014:GH72-1921-MONOMER.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha-amylase, GH13 familyImported
Gene namesi
Ordered Locus Names:TK1884Imported
OrganismiThermococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1))Imported
Taxonomic identifieri69014 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaeThermococcus
ProteomesiUP000000536 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi69014.TK1884.

Structurei

3D structure databases

ProteinModelPortaliQ5JER7.
SMRiQ5JER7. Positions 27-461.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000031038.
InParanoidiQ5JER7.
KOiK01176.
OMAiAFYWDVP.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR013776. A-amylase_thermo.
IPR015237. Alpha-amylase_C_pro.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF09154. DUF1939. 1 hit.
[Graphical view]
PIRSFiPIRSF001021. Alph-amls_thrmst. 1 hit.
PRINTSiPR00110. ALPHAAMYLASE.
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5JER7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKFVALLIT MFFVVSMAAV AQPASAAKYS ELEEGGVIMQ AFYWDVPAGG
60 70 80 90 100
IWWDTIRSKI PEWYEAGISA IWIPPASKGM GGAYSMGYDP YDFFDLGEYN
110 120 130 140 150
QKGTVETRFG SKQELINMIN TAHAYGIKVI ADIVINHRAG GDLEWNPFVG
160 170 180 190 200
DYTWTDFSKV ASGKYTANYL DFHPNEVKCC DEGTFGGFPD IAHEKEWDQH
210 220 230 240 250
WLWASDESYA AYLRSIGVDA WRFDYVKGYG AWVVKDWLNW WGGWAVGEYW
260 270 280 290 300
DTNVDALLNW AYSSGAKVFD FPLYYKMDEA FDNTNIPALV DALQNGGTVV
310 320 330 340 350
SRDPFKAVTF VANHDTDIIW NKYPAYAFIL TYEGQPVIFY RDYEEWLNKD
360 370 380 390 400
KLNNLIWIHD HLAGGSTSIV YYDSDELIFV RNGDSKRPGL ITYINLGSSK
410 420 430 440 450
VGRWVYVPKF AGACIHEYTG NLGGWVDKYV ESSGWVYLEA PAYDPASGQY
460
GYTVWSYCGV G
Length:461
Mass (Da):52,214
Last modified:February 15, 2005 - v1
Checksum:iFCC131A93DC03123
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP006878 Genomic DNA. Translation: BAD86073.1.
RefSeqiYP_184297.1. NC_006624.1.

Genome annotation databases

EnsemblBacteriaiBAD86073; BAD86073; TK1884.
GeneIDi3235729.
KEGGitko:TK1884.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP006878 Genomic DNA. Translation: BAD86073.1.
RefSeqiYP_184297.1. NC_006624.1.

3D structure databases

ProteinModelPortaliQ5JER7.
SMRiQ5JER7. Positions 27-461.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi69014.TK1884.

Protein family/group databases

CAZyiGH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAD86073; BAD86073; TK1884.
GeneIDi3235729.
KEGGitko:TK1884.

Phylogenomic databases

eggNOGiCOG0366.
HOGENOMiHOG000031038.
InParanoidiQ5JER7.
KOiK01176.
OMAiAFYWDVP.

Enzyme and pathway databases

BioCyciTKOD69014:GH72-1921-MONOMER.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR013776. A-amylase_thermo.
IPR015237. Alpha-amylase_C_pro.
IPR006046. Alpha_amylase.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF09154. DUF1939. 1 hit.
[Graphical view]
PIRSFiPIRSF001021. Alph-amls_thrmst. 1 hit.
PRINTSiPR00110. ALPHAAMYLASE.
SUPFAMiSSF51445. SSF51445. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes."
    Fukui T., Atomi H., Kanai T., Matsumi R., Fujiwara S., Imanaka T.
    Genome Res. 15:352-363(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC BAA-918 / JCM 12380 / KOD1Imported.

Entry informationi

Entry nameiQ5JER7_THEKO
AccessioniPrimary (citable) accession number: Q5JER7
Entry historyi
Integrated into UniProtKB/TrEMBL: February 15, 2005
Last sequence update: February 15, 2005
Last modified: January 7, 2015
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.