Q5JER7 (Q5JER7_PYRKO) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Alpha-amylase, GH13 family EMBL BAD86073.1

Gene names

Ordered Locus Names:

TK1884

Organism

Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Thermococcus kodakaraensis (strain KOD1))

Taxonomic identifier

69014 [NCBI]

Taxonomic lineage

Archaea › Euryarchaeota › Thermococci › Thermococcales › Thermococcaceae › Thermococcus

Protein attributes

Sequence length	461 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	calcium ion binding Inferred from electronic annotation. Source: InterPro hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q5JER7 [UniParc]. Last modified February 15, 2005. Version 1. Checksum: FCC131A93DC03123	FASTA	461	52,214
	10 20 30 40 50 60 MKKFVALLIT MFFVVSMAAV AQPASAAKYS ELEEGGVIMQ AFYWDVPAGG IWWDTIRSKI 70 80 90 100 110 120 PEWYEAGISA IWIPPASKGM GGAYSMGYDP YDFFDLGEYN QKGTVETRFG SKQELINMIN 130 140 150 160 170 180 TAHAYGIKVI ADIVINHRAG GDLEWNPFVG DYTWTDFSKV ASGKYTANYL DFHPNEVKCC 190 200 210 220 230 240 DEGTFGGFPD IAHEKEWDQH WLWASDESYA AYLRSIGVDA WRFDYVKGYG AWVVKDWLNW 250 260 270 280 290 300 WGGWAVGEYW DTNVDALLNW AYSSGAKVFD FPLYYKMDEA FDNTNIPALV DALQNGGTVV 310 320 330 340 350 360 SRDPFKAVTF VANHDTDIIW NKYPAYAFIL TYEGQPVIFY RDYEEWLNKD KLNNLIWIHD 370 380 390 400 410 420 HLAGGSTSIV YYDSDELIFV RNGDSKRPGL ITYINLGSSK VGRWVYVPKF AGACIHEYTG 430 440 450 460 NLGGWVDKYV ESSGWVYLEA PAYDPASGQY GYTVWSYCGV G

References

[1]

"Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes." Fukui T., Atomi H., Kanai T., Matsumi R., Fujiwara S., Imanaka T. Genome Res. 15:352-363(2005) [PubMed: 15710748] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-918 / JCM 12380 / KOD1 and KOD1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP006878 Genomic DNA. Translation: BAD86073.1.
RefSeq	YP_184297.1. NC_006624.1.
3D structure databases
ProteinModelPortal	Q5JER7.
SMR	Q5JER7. Positions 27-461.
ModBase	Search...
Protein family/group databases
CAZy	GH13. Glycoside Hydrolase Family 13.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	EBPYRT00000007307; EBPYRP00000007088; EBPYRG00000007306.
GeneID	3235729.
GenomeReviews	Gene locus TK1884 in contig AP006878_GR.
KEGG	tko:TK1884.
NMPDR	fig|69014.3.peg.1734.
Phylogenomic databases
eggNOG	arNOG15548.
GeneTree	EBGT00050000023509.
HOGENOM	HBG478148.
OMA	YRDYEEW.
PhylomeDB	Q5JER7.
ProtClustDB	PRK09441.
Enzyme and pathway databases
BioCyc	TKOD69014:TK1884-MONOMER.
Family and domain databases
InterPro	IPR013776. A-amylase_thermo. IPR015237. Alpha-amylase_C_pro. IPR015902. Alpha_amylase. IPR006046. Glyco_hydro_13. IPR013780. Glyco_hydro_13_b. IPR006047. Glyco_hydro_13_cat_dom. IPR013781. Glyco_hydro_subgr_catalytic. IPR017853. Glycoside_hydrolase_SF. [Graphical view]
Gene3D	G3DSA:2.60.40.1180. Glyco_hydro_13_b. 1 hit. G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
KO	K01176.
PANTHER	PTHR10357. Alpha_amylase. 1 hit.
Pfam	PF00128. Alpha-amylase. 1 hit. PF09154. DUF1939. 1 hit. [Graphical view]
PIRSF	PIRSF001021. Alph-amls_thrmst. 1 hit.
PRINTS	PR00110. ALPHAAMYLASE.
SUPFAM	SSF51445. Glyco_hydro_cat. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q5JER7_PYRKO

Accession

Primary (citable) accession number: Q5JER7

Entry history

Integrated into UniProtKB/TrEMBL:	February 15, 2005
Last sequence update:	February 15, 2005
Last modified:	November 16, 2011
This is version 47 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)