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Protein

50S ribosomal protein L30e

Gene

rpl30e

Organism
Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1))
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTKOD69014:GH72-1093-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L30eUniRule annotation
Gene namesi
Name:rpl30eUniRule annotation
Ordered Locus Names:TK1080
OrganismiThermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Pyrococcus kodakaraensis (strain KOD1))
Taxonomic identifieri69014 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaeThermococcus
Proteomesi
  • UP000000536 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 10210250S ribosomal protein L30ePRO_0000146157Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi69014.TK1080.

Structurei

3D structure databases

ProteinModelPortaliQ5JE35.
SMRiQ5JE35. Positions 1-99.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L30e family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG01752. Archaea.
COG1911. LUCA.
HOGENOMiHOG000055224.
InParanoidiQ5JE35.
KOiK02908.
OMAiDIPVYEF.

Family and domain databases

Gene3Di3.30.1330.30. 1 hit.
HAMAPiMF_00481. Ribosomal_L30e. 1 hit.
InterProiIPR029064. L30e-like.
IPR000231. Ribosomal_L30e.
IPR022991. Ribosomal_L30e_CS.
IPR004038. Ribosomal_L7Ae/L30e/S12e/Gad45.
[Graphical view]
PANTHERiPTHR11449. PTHR11449. 1 hit.
PfamiPF01248. Ribosomal_L7Ae. 1 hit.
[Graphical view]
SUPFAMiSSF55315. SSF55315. 1 hit.
PROSITEiPS00993. RIBOSOMAL_L30E_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5JE35-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVDFAFELRK VQDTGKIVMG AKKSIHLAKV GGAKLIIVAR NARPDIKEDI
60 70 80 90 100
YYYAKLSGIP VYEFEGTSVE LGTLLGRPHT VSALAVIDPG ESKILALAGG

KE
Length:102
Mass (Da):10,957
Last modified:February 15, 2005 - v1
Checksum:iC68E06DD07000BCF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP006878 Genomic DNA. Translation: BAD85269.1.
RefSeqiWP_011250031.1. NC_006624.1.

Genome annotation databases

EnsemblBacteriaiBAD85269; BAD85269; TK1080.
GeneIDi3233695.
KEGGitko:TK1080.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP006878 Genomic DNA. Translation: BAD85269.1.
RefSeqiWP_011250031.1. NC_006624.1.

3D structure databases

ProteinModelPortaliQ5JE35.
SMRiQ5JE35. Positions 1-99.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi69014.TK1080.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAD85269; BAD85269; TK1080.
GeneIDi3233695.
KEGGitko:TK1080.

Phylogenomic databases

eggNOGiarCOG01752. Archaea.
COG1911. LUCA.
HOGENOMiHOG000055224.
InParanoidiQ5JE35.
KOiK02908.
OMAiDIPVYEF.

Enzyme and pathway databases

BioCyciTKOD69014:GH72-1093-MONOMER.

Family and domain databases

Gene3Di3.30.1330.30. 1 hit.
HAMAPiMF_00481. Ribosomal_L30e. 1 hit.
InterProiIPR029064. L30e-like.
IPR000231. Ribosomal_L30e.
IPR022991. Ribosomal_L30e_CS.
IPR004038. Ribosomal_L7Ae/L30e/S12e/Gad45.
[Graphical view]
PANTHERiPTHR11449. PTHR11449. 1 hit.
PfamiPF01248. Ribosomal_L7Ae. 1 hit.
[Graphical view]
SUPFAMiSSF55315. SSF55315. 1 hit.
PROSITEiPS00993. RIBOSOMAL_L30E_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL30E_THEKO
AccessioniPrimary (citable) accession number: Q5JE35
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 30, 2005
Last sequence update: February 15, 2005
Last modified: September 7, 2016
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.