Q5JDV2 (Q5JDV2_PYRKO) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Membrane-bound beta-glycosidase, GH1 family EMBL BAD86016.1

Gene names

Ordered Locus Names:

TK1827

Organism

Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Thermococcus kodakaraensis (strain KOD1))

Taxonomic identifier

69014 [NCBI]

Taxonomic lineage

Archaea › Euryarchaeota › Thermococci › Thermococcales › Thermococcaceae › Thermococcus

Protein attributes

Sequence length	412 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the glycosyl hydrolase 1 family. RuleBase RU003690

Ontologies

Keywords
Molecular function	Glycosidase EMBL BAD86016.1 Hydrolase
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	cation binding Inferred from electronic annotation. Source: InterPro hydrolase activity, hydrolyzing O-glycosyl compounds Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q5JDV2 [UniParc]. Last modified February 15, 2005. Version 1. Checksum: 1659A9B552E71BAA	FASTA	412	48,534
	10 20 30 40 50 60 MLSMFPEKFL FGTSTAAHQV EGDNKWNDWW YYEEMGKLPY KSGKACNHWE LYREDIELMA 70 80 90 100 110 120 ELGYNAYRFS IEWSRLFPEE GKFNEDAFNR YREIIELLLE KGITPNVTLH HFTSPLWFMR 130 140 150 160 170 180 KGGFLKEENL KYWEGYVDKA AELLKGVKLV ATFNEPLVYV TMGYLTAYWP PFIKSPFKSF 190 200 210 220 230 240 RVAANLLKAH AIAYELLHGK FQVGIVKHIR VMLPERKGDE KAAQKADNLF NWYFLDAIWS 250 260 270 280 290 300 GKYRGAFKTY SVPESDADFI GVNYYTASTV RRSLNPLKMF FEAKDAEIGE RRTQMGWSVY 310 320 330 340 350 360 PEGVYLALRR ASEYGRPLYV TENGIATLDD EWRKEFIIQH LRQVLRAIED GLDVRGYFYW 370 380 390 400 410 SLMDNYEWRE GFEPRFGLIE VDFETFERRP RGSAYLYGEI ARTKKLPGEE DP

References

[1]

"Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes." Fukui T., Atomi H., Kanai T., Matsumi R., Fujiwara S., Imanaka T. Genome Res. 15:352-363(2005) [PubMed: 15710748] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-918 / JCM 12380 / KOD1 and KOD1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP006878 Genomic DNA. Translation: BAD86016.1.
RefSeq	YP_184240.1. NC_006624.1.
3D structure databases
ProteinModelPortal	Q5JDV2.
SMR	Q5JDV2. Positions 5-409.
ModBase	Search...
Protein family/group databases
CAZy	GH1. Glycoside Hydrolase Family 1.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	EBPYRT00000008122; EBPYRP00000007903; EBPYRG00000008121.
GeneID	3235412.
GenomeReviews	Gene locus TK1827 in contig AP006878_GR.
KEGG	tko:TK1827.
NMPDR	fig|69014.3.peg.1677.
Phylogenomic databases
eggNOG	arNOG04026.
GeneTree	EBGT00050000023099.
HOGENOM	HBG316462.
OMA	ACNHWEL.
PhylomeDB	Q5JDV2.
ProtClustDB	CLSK689645.
Enzyme and pathway databases
BioCyc	TKOD69014:TK1827-MONOMER.
Family and domain databases
InterPro	IPR001360. Glyco_hydro_1. IPR018120. Glyco_hydro_1_AS. IPR013781. Glyco_hydro_subgr_catalytic. IPR017853. Glycoside_hydrolase_SF. [Graphical view]
Gene3D	G3DSA:3.20.20.80. Glyco_hydro_cat. 1 hit.
KO	K01188.
PANTHER	PTHR10353. Glyco_hydro_1. 1 hit.
Pfam	PF00232. Glyco_hydro_1. 1 hit. [Graphical view]
PRINTS	PR00131. GLHYDRLASE1.
SUPFAM	SSF51445. Glyco_hydro_cat. 1 hit.
PROSITE	PS00572. GLYCOSYL_HYDROL_F1_1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q5JDV2_PYRKO

Accession

Primary (citable) accession number: Q5JDV2

Entry history

Integrated into UniProtKB/TrEMBL:	February 15, 2005
Last sequence update:	February 15, 2005
Last modified:	December 14, 2011
This is version 47 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)