Q5JDF6 (Q5JDF6_PYRKO) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Phosphoribosylaminoimidazole carboxylase, ATPase subunit EMBL BAD85024.1

Gene names

Ordered Locus Names:

TK0835

Organism

Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (Thermococcus kodakaraensis (strain KOD1))

Taxonomic identifier

69014 [NCBI]

Taxonomic lineage

Archaea › Euryarchaeota › Thermococci › Thermococcales › Thermococcaceae › Thermococcus

Protein attributes

Sequence length	381 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	'de novo' IMP biosynthetic process Inferred from electronic annotation. Source: InterPro
Molecular function	ATP binding Inferred from electronic annotation. Source: InterPro ligase activity Inferred from electronic annotation. Source: InterPro metal ion binding Inferred from electronic annotation. Source: InterPro phosphoribosylaminoimidazole carboxylase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q5JDF6 [UniParc]. Last modified February 15, 2005. Version 1. Checksum: 87D25D6ECB0DFBA6	FASTA	381	41,952
	10 20 30 40 50 60 MRDGFRIGIL GGGQLAKMSA QEARRMGFDV LVLDPTPGCP ASMVAEQIVG SFQDGEMVIE 70 80 90 100 110 120 LAERADVVTY DIESVNVEAL KKVAKEKPVI PEPHVLEVIR DKYVQKKVLR RAGVPVPWFR 130 140 150 160 170 180 ELKSLDELEN LIPVVQKARS GGYDGRGVVV IRDEKDLQKA LNVPSYVEEL VPIEKELSVI 190 200 210 220 230 240 VVRNDDETLA YPTTEMVFNN EGNILDFLVA PGRVEKDVEK EAEEIAIRAV EALDGRGVFG 250 260 270 280 290 300 VEMFLARDGR VLVNEIAPRP HNSGHWTIEA AVSSQFEQHV RVVADLPLGS TEVVLNAAMV 310 320 330 340 350 360 NLLGEKGYYG KPVYDGVSEA LRIPGVFVHV YGKREVFPFR KMGHVTAVDR TLPGAIEKAL 370 380 RAKALIRVRG EVNAQSGNNN G

References

[1]

"Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes." Fukui T., Atomi H., Kanai T., Matsumi R., Fujiwara S., Imanaka T. Genome Res. 15:352-363(2005) [PubMed: 15710748] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC BAA-918 / JCM 12380 / KOD1 and KOD1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP006878 Genomic DNA. Translation: BAD85024.1.
RefSeq	YP_183248.1. NC_006624.1.
3D structure databases
ProteinModelPortal	Q5JDF6.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	EBPYRT00000006533; EBPYRP00000006314; EBPYRG00000006532.
GeneID	3234713.
GenomeReviews	Gene locus TK0835 in contig AP006878_GR.
KEGG	tko:TK0835.
NMPDR	fig|69014.3.peg.1252.
Phylogenomic databases
eggNOG	arNOG04188.
GeneTree	EBGT00050000023405.
HOGENOM	HBG516369.
OMA	GRKMGHF.
PhylomeDB	Q5JDF6.
ProtClustDB	PRK06019.
Enzyme and pathway databases
BioCyc	TKOD69014:TK0835-MONOMER.
Family and domain databases
InterPro	IPR005875. AIR_COase_ATPase-su. IPR011761. ATP-grasp. IPR003135. ATP-grasp_carboxylate-amine. IPR013815. ATP_grasp_subdomain_1. IPR013816. ATP_grasp_subdomain_2. IPR013817. Pre-ATP_grasp. IPR016185. PreATP-grasp-like. IPR011054. Rudment_hybrid_motif. [Graphical view]
Gene3D	G3DSA:3.30.1490.20. ATP_grasp_subdomain_1. 1 hit. G3DSA:3.30.470.20. ATP_grasp_subdomain_2. 1 hit. G3DSA:3.40.50.20. Pre-ATP_grasp. 1 hit.
KO	K01589.
Pfam	PF02222. ATP-grasp. 1 hit. [Graphical view]
SUPFAM	SSF52440. PreATP-grasp-like. 1 hit. SSF51246. Rudmnt_hyb_motif. 1 hit.
TIGRFAMs	TIGR01161. PurK. 1 hit.
PROSITE	PS50975. ATP_GRASP. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q5JDF6_PYRKO

Accession

Primary (citable) accession number: Q5JDF6

Entry history

Integrated into UniProtKB/TrEMBL:	February 15, 2005
Last sequence update:	February 15, 2005
Last modified:	November 16, 2011
This is version 65 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)