Q5HZH2 (TSR3_MOUSE) Reviewed, UniProtKB/Swiss-Prot
Last modified
December 14, 2011.
Version 56.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Probable ribosome biogenesis protein C16orf42 homolog |
| Organism | Mus musculus (Mouse) |
| Taxonomic identifier | 10090 [NCBI] |
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus |
Protein attributes
| Sequence length | 323 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at transcript level |
General annotation (Comments)
| Function | Probable pre-rRNA processing protein involved in ribosome biogenesis By similarity. |
| Sequence similarities | Belongs to the TSR3 family. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Ribosome biogenesis rRNA processing |
| PTM | Phosphoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological process | rRNA processing Inferred from electronic annotation. Source: UniProtKB-KW |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 323 | 323 | Probable ribosome biogenesis protein C16orf42 homolog | PRO_0000278670 | |||||
Amino acid modifications | |||||||||
| Modified residue | 266 | 1 | Phosphoserine By similarity | ||||||
Experimental info | |||||||||
| Sequence conflict | 245 | 1 | V → E in BAB22003. Ref.1 | ||||||
Sequences
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References
| [1] | "The transcriptional landscape of the mammalian genome." Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J. Hayashizaki Y.Science 309:1559-1563(2005) [PubMed: 16141072] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: C57BL/6J and NOD. Tissue: Kidney and Visual cortex. |
| [2] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: C57BL/6. Tissue: Eye. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AK002309 mRNA. Translation: BAB22003.1. AK158743 mRNA. Translation: BAE34637.1. AK170074 mRNA. Translation: BAE41547.1. BC089019 mRNA. Translation: AAH89019.1. |
| IPI | IPI00121172. |
| RefSeq | NP_001157190.1. NM_001163718.1. NP_080952.2. NM_026676.3. |
| UniGene | Mm.180687. |
3D structure databases | |
| ProteinModelPortal | Q5HZH2. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | Q5HZH2. |
PTM databases | |
| PhosphoSite | Q5HZH2. |
Proteomic databases | |
| PRIDE | Q5HZH2. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENSMUST00000063574; ENSMUSP00000068511; ENSMUSG00000015126. |
| GeneID | 68327. |
| KEGG | mmu:68327. |
| NMPDR | fig|10090.3.peg.2378. |
| UCSC | uc008baf.2. mouse. |
Organism-specific databases | |
| MGI | MGI:1915577. 0610007P22Rik. |
Phylogenomic databases | |
| HOGENOM | HBG527152. |
| HOVERGEN | HBG063013. |
| InParanoid | Q5HZH2. |
| OMA | TLAMWEL. |
| OrthoDB | EOG4QRH50. |
| PhylomeDB | Q5HZH2. |
Gene expression databases | |
| ArrayExpress | Q5HZH2. |
| Bgee | Q5HZH2. |
| CleanEx | MM_0610007P22RIK. |
| Genevestigator | Q5HZH2. |
Family and domain databases | |
| InterPro | IPR007177. DUF367. IPR022968. Rbsm_biogenesis. IPR007209. RNaseL-inhib_metal-bd_dom. [Graphical view] |
| KO | K09140. |
| PANTHER | PTHR20426. PTHR20426. 1 hit. |
| Pfam | PF04034. DUF367. 1 hit. PF04068. RLI. 1 hit. [Graphical view] |
| ProDom | PD016638. DUF367. 1 hit. [Graphical view] [Entries sharing at least one domain] |
| ProtoNet | Search... |
Other | |
| NextBio | 327001. |
Entry information
| Entry name | TSR3_MOUSE | ||||||||
| Accession | Primary (citable) accession number: Q5HZH2 Secondary accession number(s): Q9DD00 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
Relevant documents
| MGD cross-references Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with