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Protein

Protein Brevis radix-like 3

Gene

BRXL3

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Protein Brevis radix-like 3
Short name:
AtBRXL3
Gene namesi
Name:BRXL3
Ordered Locus Names:At1g54180
ORF Names:F15I1.28
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 1

Organism-specific databases

AraportiAT1G54180.
TAIRilocus:2014345. AT1G54180.

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Nucleus

Pathology & Biotechi

Disruption phenotypei

No visible phenotype.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003738241 – 370Protein Brevis radix-like 3Add BLAST370

Proteomic databases

PaxDbiQ5HZ09.

Expressioni

Tissue specificityi

Expressed in roots.1 Publication

Gene expression databases

ExpressionAtlasiQ5HZ09. baseline and differential.
GenevisibleiQ5HZ09. AT.

Interactioni

Protein-protein interaction databases

STRINGi3702.AT1G54180.1.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini140 – 221BRX 1PROSITE-ProRule annotationAdd BLAST82
Domaini315 – 370BRX 2PROSITE-ProRule annotationAdd BLAST56

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi268 – 315Ser-richAdd BLAST48

Sequence similaritiesi

Belongs to the BRX family.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiENOG410IGAU. Eukaryota.
ENOG4112D19. LUCA.
HOGENOMiHOG000240563.
InParanoidiQ5HZ09.
OMAiSTPKIWG.
OrthoDBiEOG09360FGB.

Family and domain databases

InterProiView protein in InterPro
IPR013591. Brevis_radix_dom.
IPR027988. BRX_N.
PfamiView protein in Pfam
PF08381. BRX. 3 hits.
PF13713. BRX_N. 1 hit.
PROSITEiView protein in PROSITE
PS51514. BRX. 2 hits.

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q5HZ09-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MLTCIACTKQ LNTNNGGSTR EEDEEHGVIG TPRTKQAIKS LTSQLKDMAV
60 70 80 90 100
KASGAYKNCK PCSGTTNRNQ NRNYADSDAA SDSGRFHYSY QRAGTATSTP
110 120 130 140 150
KIWGNEMESR LKGISSEEGT PTSMSGRTES IVFMEDDEVK EWVAQVEPGV
160 170 180 190 200
LITFVSLPQG GNDLKRIRFR STRFPYYRDQ LLLWCRQGWV FWPQNCREMF
210 220 230 240 250
NKWQAQKWWV ENFEKVMELY NVQFNQQSVP LQTPPVSEDG GSQIQSVKDS
260 270 280 290 300
PVTPPLERER PHRNIPGSSG FASTPKLSSI SGTKTETSSI DGSARSSSVD
310 320 330 340 350
RSEEVSVSNA SDMESEWVEQ DEPGIYITIR ALPDGNRELR RVRFSRDKFG
360 370
ETHARLWWEQ NRARIQQQYL
Length:370
Mass (Da):41,991
Last modified:May 3, 2011 - v2
Checksum:iED2F031CB73A4CF0
GO
Isoform 2 (identifier: Q5HZ09-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     170-196: RSTRFPYYRDQLLLWCRQGWVFWPQNC → S

Note: No experimental confirmation available.
Show »
Length:344
Mass (Da):38,576
Checksum:iCBD566F2A64A3F30
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti290I → T in AAV91342 (Ref. 3) Curated1
Sequence conflicti290I → T in AAU44409 (Ref. 3) Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_037243170 – 196RSTRF…WPQNC → S in isoform 2. 1 PublicationAdd BLAST27

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC005287 Genomic DNA. No translation available.
AC006577 Genomic DNA. Translation: AAD25792.1.
CP002684 Genomic DNA. Translation: AEE33058.1.
CP002684 Genomic DNA. Translation: AEE33059.1.
BT020396 mRNA. Translation: AAV91342.1.
BT020515 mRNA. Translation: AAW39016.1.
AY735539 mRNA. Translation: AAU44409.1.
AY924710 mRNA. Translation: AAX23785.1.
PIRiA96583.
RefSeqiNP_001154422.1. NM_001160950.2. [Q5HZ09-2]
NP_175820.2. NM_104296.5. [Q5HZ09-1]
UniGeneiAt.66930.

Genome annotation databases

EnsemblPlantsiAT1G54180.1; AT1G54180.1; AT1G54180. [Q5HZ09-1]
AT1G54180.2; AT1G54180.2; AT1G54180. [Q5HZ09-2]
GeneIDi841858.
GrameneiAT1G54180.1; AT1G54180.1; AT1G54180.
AT1G54180.2; AT1G54180.2; AT1G54180.
KEGGiath:AT1G54180.

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Entry informationi

Entry nameiBRXL3_ARATH
AccessioniPrimary (citable) accession number: Q5HZ09
Secondary accession number(s): Q5M752, Q5XVI3, Q9SYH6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 5, 2009
Last sequence update: May 3, 2011
Last modified: August 30, 2017
This is version 64 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families