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Protein
Submitted name:

Leukocyte-specific transcript 1 protein

Gene

LST1

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Leukocyte-specific transcript 1 proteinImported
Gene namesi
Name:LST1Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 6

Organism-specific databases

HGNCiHGNC:14189. LST1.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei12 – 3423HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Expressioni

Gene expression databases

BgeeiQ5HYT5.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000365261.

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG410JN3N. Eukaryota.
ENOG4111AGB. LUCA.
GeneTreeiENSGT00730000112003.

Family and domain databases

InterProiIPR007775. Leukocyte-sp_tscrpt_1_LST1.
[Graphical view]
PfamiPF05083. LST1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q5HYT5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30 
MLSRNDDICI YGGLGLGGLL LLAVVLLSAC LCWLHR
Length:36
Mass (Da):3,873
Last modified:February 15, 2005 - v1
Checksum:i887F8AE2BBCEBBDC
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei36 – 361Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL662801 Genomic DNA. No translation available.
AL662847 Genomic DNA. No translation available.
AL929587 Genomic DNA. No translation available.
BX248519 Genomic DNA. No translation available.
BX927320 Genomic DNA. No translation available.
CR753892 Genomic DNA. No translation available.
CR759886 Genomic DNA. No translation available.
CR942185 Genomic DNA. No translation available.

Genome annotation databases

EnsembliENST00000412283; ENSP00000407209; ENSG00000226182.
ENST00000429792; ENSP00000395821; ENSG00000223465.
ENST00000433492; ENSP00000399869; ENSG00000204482.
ENST00000433520; ENSP00000402235; ENSG00000230791.
ENST00000436969; ENSP00000411296; ENSG00000234514.
ENST00000439436; ENSP00000407449; ENSG00000231048.
ENST00000444783; ENSP00000410543; ENSG00000235915.
ENST00000450047; ENSP00000402102; ENSG00000206433.
UCSCiuc063ncd.1. human.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL662801 Genomic DNA. No translation available.
AL662847 Genomic DNA. No translation available.
AL929587 Genomic DNA. No translation available.
BX248519 Genomic DNA. No translation available.
BX927320 Genomic DNA. No translation available.
CR753892 Genomic DNA. No translation available.
CR759886 Genomic DNA. No translation available.
CR942185 Genomic DNA. No translation available.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9606.ENSP00000365261.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000412283; ENSP00000407209; ENSG00000226182.
ENST00000429792; ENSP00000395821; ENSG00000223465.
ENST00000433492; ENSP00000399869; ENSG00000204482.
ENST00000433520; ENSP00000402235; ENSG00000230791.
ENST00000436969; ENSP00000411296; ENSG00000234514.
ENST00000439436; ENSP00000407449; ENSG00000231048.
ENST00000444783; ENSP00000410543; ENSG00000235915.
ENST00000450047; ENSP00000402102; ENSG00000206433.
UCSCiuc063ncd.1. human.

Organism-specific databases

HGNCiHGNC:14189. LST1.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiENOG410JN3N. Eukaryota.
ENOG4111AGB. LUCA.
GeneTreeiENSGT00730000112003.

Miscellaneous databases

ChiTaRSiLST1. human.

Gene expression databases

BgeeiQ5HYT5.

Family and domain databases

InterProiIPR007775. Leukocyte-sp_tscrpt_1_LST1.
[Graphical view]
PfamiPF05083. LST1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The DNA sequence and analysis of human chromosome 6."
    Mungall A.J., Palmer S.A., Sims S.K., Edwards C.A., Ashurst J.L., Wilming L., Jones M.C., Horton R., Hunt S.E., Scott C.E., Gilbert J.G.R., Clamp M.E., Bethel G., Milne S., Ainscough R., Almeida J.P., Ambrose K.D., Andrews T.D.
    , Ashwell R.I.S., Babbage A.K., Bagguley C.L., Bailey J., Banerjee R., Barker D.J., Barlow K.F., Bates K., Beare D.M., Beasley H., Beasley O., Bird C.P., Blakey S.E., Bray-Allen S., Brook J., Brown A.J., Brown J.Y., Burford D.C., Burrill W., Burton J., Carder C., Carter N.P., Chapman J.C., Clark S.Y., Clark G., Clee C.M., Clegg S., Cobley V., Collier R.E., Collins J.E., Colman L.K., Corby N.R., Coville G.J., Culley K.M., Dhami P., Davies J., Dunn M., Earthrowl M.E., Ellington A.E., Evans K.A., Faulkner L., Francis M.D., Frankish A., Frankland J., French L., Garner P., Garnett J., Ghori M.J., Gilby L.M., Gillson C.J., Glithero R.J., Grafham D.V., Grant M., Gribble S., Griffiths C., Griffiths M.N.D., Hall R., Halls K.S., Hammond S., Harley J.L., Hart E.A., Heath P.D., Heathcott R., Holmes S.J., Howden P.J., Howe K.L., Howell G.R., Huckle E., Humphray S.J., Humphries M.D., Hunt A.R., Johnson C.M., Joy A.A., Kay M., Keenan S.J., Kimberley A.M., King A., Laird G.K., Langford C., Lawlor S., Leongamornlert D.A., Leversha M., Lloyd C.R., Lloyd D.M., Loveland J.E., Lovell J., Martin S., Mashreghi-Mohammadi M., Maslen G.L., Matthews L., McCann O.T., McLaren S.J., McLay K., McMurray A., Moore M.J.F., Mullikin J.C., Niblett D., Nickerson T., Novik K.L., Oliver K., Overton-Larty E.K., Parker A., Patel R., Pearce A.V., Peck A.I., Phillimore B.J.C.T., Phillips S., Plumb R.W., Porter K.M., Ramsey Y., Ranby S.A., Rice C.M., Ross M.T., Searle S.M., Sehra H.K., Sheridan E., Skuce C.D., Smith S., Smith M., Spraggon L., Squares S.L., Steward C.A., Sycamore N., Tamlyn-Hall G., Tester J., Theaker A.J., Thomas D.W., Thorpe A., Tracey A., Tromans A., Tubby B., Wall M., Wallis J.M., West A.P., White S.S., Whitehead S.L., Whittaker H., Wild A., Willey D.J., Wilmer T.E., Wood J.M., Wray P.W., Wyatt J.C., Young L., Younger R.M., Bentley D.R., Coulson A., Durbin R., Hubbard T., Sulston J.E., Dunham I., Rogers J., Beck S.
    Nature 425:805-811(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  2. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
  3. Ensembl
    Submitted (JUN-2015) to UniProtKB
    Cited for: IDENTIFICATION.

Entry informationi

Entry nameiQ5HYT5_HUMAN
AccessioniPrimary (citable) accession number: Q5HYT5
Entry historyi
Integrated into UniProtKB/TrEMBL: February 15, 2005
Last sequence update: February 15, 2005
Last modified: July 6, 2016
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.