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Q5HSC4 (Q5HSC4_CAMJR) Unreviewed, UniProtKB/TrEMBL

Last modified January 22, 2014. Version 57. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length282 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL AAW36263.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA ligation involved in DNA repair

Inferred from electronic annotation. Source: InterPro

DNA recombination

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q5HSC4 [UniParc].

Last modified February 15, 2005. Version 1.
Checksum: 09CF886AA2B8D0BE

FASTA28232,440
        10         20         30         40         50         60 
MRFVFLICCA CLVFANEILL LSKFDKQDFN SKDFNAYLMS EKLDGVRGIW DGKYLKTRQN 

        70         80         90        100        110        120 
YKIKTPDFFT KNFPPFAIDG ELWIARNKFD EISALIRSGD SNLTLWKEVT YNIFDVPNAC 

       130        140        150        160        170        180 
EEFQISTCTL KNCLAVLEEY LQKYPSAYIK IISQIPVENQ NNLNQFYESI IKNQGEGIVI 

       190        200        210        220        230        240 
RKNLSPYEKG RSKNAMKLKP YDDAECELVG FRKGKGKFEN QVGALLCKMP NGQIIKIGSG 

       250        260        270        280 
LKDEDRKNPP KIGSIVTYKF NGLTKNSLPR FPVFLRIRDE NP 

« Hide

References

[1]"Major structural differences and novel potential virulence mechanisms from the genomes of multiple Campylobacter species."
Fouts D.E., Mongodin E.F., Mandrell R.E., Miller W.G., Rasko D.A., Ravel J., Brinkac L.M., DeBoy R.T., Parker C.T., Daugherty S.C., Dodson R.J., Durkin A.S., Madupu R., Sullivan S.A., Shetty J.U., Ayodeji M.A., Shvartsbeyn A., Schatz M.C. expand/collapse author list , Badger J.H., Fraser C.M., Nelson K.E.
PLoS Biol. 3:72-85(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: RM1221 EMBL AAW36263.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000025 Genomic DNA. Translation: AAW36263.1.
RefSeqYP_179811.1. NC_003912.7.

3D structure databases

ProteinModelPortalQ5HSC4.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING195099.CJE1841.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAW36263; AAW36263; CJE1841.
GeneID3232468.
KEGGcjr:CJE1841.
PATRIC20045514. VBICamJej134361_1859.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1793.
HOGENOMHOG000293070.
KOK01971.
OMAVRGYWDG.
OrthoDBEOG60919Q.
ProtClustDBPRK09125.

Enzyme and pathway databases

BioCycCJEJ195099:GJC0-1880-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
PROSITEPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ5HSC4_CAMJR
AccessionPrimary (citable) accession number: Q5HSC4
Entry history
Integrated into UniProtKB/TrEMBL: February 15, 2005
Last sequence update: February 15, 2005
Last modified: January 22, 2014
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)