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Protein
Submitted name:

Transcriptional regulator TcaR

Gene

tcaR

Organism
Staphylococcus epidermidis (strain ATCC 35984 / RP62A)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulationSAAS annotation

Keywords - Ligandi

DNA-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Transcriptional regulator TcaRImported
Gene namesi
Name:tcaRImported
Ordered Locus Names:SERP1949Imported
OrganismiStaphylococcus epidermidis (strain ATCC 35984 / RP62A)Imported
Taxonomic identifieri176279 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesStaphylococcaceaeStaphylococcus
Proteomesi
  • UP000000531 Componenti: Chromosome

PTM / Processingi

Proteomic databases

PRIDEiQ5HLN6.

Interactioni

Protein-protein interaction databases

DIPiDIP-59325N.
STRINGi176279.SERP1949.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3KP2X-ray2.55A/B1-151[»]
3KP3X-ray3.20A/B1-151[»]
3KP4X-ray2.84A/B1-151[»]
3KP5X-ray3.00A/B1-151[»]
3KP6X-ray2.45A/B1-151[»]
3KP7X-ray2.30A/B1-151[»]
4EJTX-ray3.00A/B1-151[»]
4EJUX-ray2.40A/B1-151[»]
4EJVX-ray2.90A/B1-151[»]
4EJWX-ray2.80A/B1-151[»]
ProteinModelPortaliQ5HLN6.
SMRiQ5HLN6.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5HLN6.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 142HTH marR-type DNA-bindingInterPro annotationAdd BLAST142

Phylogenomic databases

eggNOGiENOG41062A4. Bacteria.
ENOG410XUB6. LUCA.
HOGENOMiHOG000280237.
OMAiQYIDESK.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR000835. HTH_MarR-typ.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
SMARTiSM00347. HTH_MARR. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50995. HTH_MARR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5HLN6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVRRIEDHIS FLEKFINDVN TLTAKLLKDL QTEYGISAEQ SHVLNMLSIE
60 70 80 90 100
ALTVGQITEK QGVNKAAVSR RVKKLLNAEL VKLEKPDSNT DQRLKIIKLS
110 120 130 140 150
NKGKKYIKER KAIMSHIASD MTSDFDSKEI EKVRQVLEII DYRIQSYTSK

L
Length:151
Mass (Da):17,348
Last modified:February 15, 2005 - v1
Checksum:i600536DFEFD5399D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000029 Genomic DNA. Translation: AAW52831.1.
RefSeqiWP_001832914.1. NC_002976.3.

Genome annotation databases

EnsemblBacteriaiAAW52831; AAW52831; SERP1949.
KEGGiser:SERP1949.
PATRICi19614818. VBIStaEpi130894_1898.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000029 Genomic DNA. Translation: AAW52831.1.
RefSeqiWP_001832914.1. NC_002976.3.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3KP2X-ray2.55A/B1-151[»]
3KP3X-ray3.20A/B1-151[»]
3KP4X-ray2.84A/B1-151[»]
3KP5X-ray3.00A/B1-151[»]
3KP6X-ray2.45A/B1-151[»]
3KP7X-ray2.30A/B1-151[»]
4EJTX-ray3.00A/B1-151[»]
4EJUX-ray2.40A/B1-151[»]
4EJVX-ray2.90A/B1-151[»]
4EJWX-ray2.80A/B1-151[»]
ProteinModelPortaliQ5HLN6.
SMRiQ5HLN6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-59325N.
STRINGi176279.SERP1949.

Proteomic databases

PRIDEiQ5HLN6.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAW52831; AAW52831; SERP1949.
KEGGiser:SERP1949.
PATRICi19614818. VBIStaEpi130894_1898.

Phylogenomic databases

eggNOGiENOG41062A4. Bacteria.
ENOG410XUB6. LUCA.
HOGENOMiHOG000280237.
OMAiQYIDESK.

Miscellaneous databases

EvolutionaryTraceiQ5HLN6.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR000835. HTH_MarR-typ.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
SMARTiSM00347. HTH_MARR. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS50995. HTH_MARR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ5HLN6_STAEQ
AccessioniPrimary (citable) accession number: Q5HLN6
Entry historyi
Integrated into UniProtKB/TrEMBL: February 15, 2005
Last sequence update: February 15, 2005
Last modified: November 2, 2016
This is version 86 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.