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Q5HAS9 (RL16_EHRRW) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 61. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L16
Gene names
Name:rplP
Ordered Locus Names:Erum6000, ERWE_CDS_06310
OrganismEhrlichia ruminantium (strain Welgevonden) [Complete proteome] [HAMAP]
Taxonomic identifier254945 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRickettsialesAnaplasmataceaeEhrlichia

Protein attributes

Sequence length136 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs By similarity. HAMAP-Rule MF_01342

Subunit structure

Part of the 50S ribosomal subunit By similarity. HAMAP-Rule MF_01342

Sequence similarities

Belongs to the ribosomal protein L16P family.

Ontologies

Keywords
   DomainRepeat
   LigandRNA-binding
rRNA-binding
tRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionrRNA binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

tRNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 13613650S ribosomal protein L16 HAMAP-Rule MF_01342
PRO_0000062098

Sequences

Sequence LengthMass (Da)Tools
Q5HAS9 [UniParc].

Last modified February 15, 2005. Version 1.
Checksum: 1EAE7A3764EBD66A

FASTA13615,208
        10         20         30         40         50         60 
MFIPKKTKYK KDFKGRISGN AKGGYTLAFG TYGLKSLEPG RLTSKQVESA RRSISRTLKR 

        70         80         90        100        110        120 
VGKVWIRVFC HTPVSKKPMD VRMGKGKGSI EMWVCKVKPG KILFEISGVS LNLAKEALQK 

       130 
SQAKLPVKCK FISDEL 

« Hide

References

[1]"The genome of the heartwater agent Ehrlichia ruminantium contains multiple tandem repeats of actively variable copy number."
Collins N.E., Liebenberg J., de Villiers E.P., Brayton K.A., Louw E., Pretorius A., Faber F.E., van Heerden H., Josemans A., van Kleef M., Steyn H.C., van Strijp M.F., Zweygarth E., Jongejan F., Maillard J.C., Berthier D., Botha M., Joubert F. expand/collapse author list , Corton C.H., Thomson N.R., Allsopp M.T., Allsopp B.A.
Proc. Natl. Acad. Sci. U.S.A. 102:838-843(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Welgevonden.
[2]"Comparative genomic analysis of three strains of Ehrlichia ruminantium reveals an active process of genome size plasticity."
Frutos R., Viari A., Ferraz C., Morgat A., Eychenie S., Kandassamy Y., Chantal I., Bensaid A., Coissac E., Vachiery N., Demaille J., Martinez D.
J. Bacteriol. 188:2533-2542(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Welgevonden.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CR767821 Genomic DNA. Translation: CAH58332.1.
CR925678 Genomic DNA. Translation: CAI27125.1.
RefSeqYP_180465.1. NC_005295.2.
YP_197507.1. NC_006832.1.

3D structure databases

ProteinModelPortalQ5HAS9.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING254945.Erum6000.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCAH58332; CAH58332; Erum6000.
CAI27125; CAI27125; ERWE_CDS_06310.
GeneID3232675.
3260744.
KEGGeru:Erum6000.
erw:ERWE_CDS_06310.
PATRIC20581112. VBIEhrRum92411_0665.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0197.
HOGENOMHOG000164573.
KOK02878.
OMALKTTFVT.
OrthoDBEOG6WHNWS.

Enzyme and pathway databases

BioCycERUM254945:GJ2L-661-MONOMER.

Family and domain databases

Gene3D3.90.1170.10. 1 hit.
HAMAPMF_01342. Ribosomal_L16.
InterProIPR016180. Ribosomal_L10e/L16.
IPR000114. Ribosomal_L16.
IPR020798. Ribosomal_L16_CS.
[Graphical view]
PANTHERPTHR12220. PTHR12220. 1 hit.
PfamPF00252. Ribosomal_L16. 1 hit.
[Graphical view]
PRINTSPR00060. RIBOSOMALL16.
SUPFAMSSF54686. SSF54686. 1 hit.
TIGRFAMsTIGR01164. rplP_bact. 1 hit.
PROSITEPS00701. RIBOSOMAL_L16_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRL16_EHRRW
AccessionPrimary (citable) accession number: Q5HAS9
Secondary accession number(s): Q5FD65
Entry history
Integrated into UniProtKB/Swiss-Prot: January 10, 2006
Last sequence update: February 15, 2005
Last modified: May 14, 2014
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries