Q5H9R7 (PP6R3_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 81.
History...
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Interactions·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Serine/threonine-protein phosphatase 6 regulatory subunit 3 Alternative name(s): SAPS domain family member 3 Sporulation-induced transcript 4-associated protein SAPL | ||||
| Gene names |
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| Organism | Homo sapiens (Human) [Reference proteome] | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 873 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Regulatory subunit of protein phosphatase 6 (PP6). May function as a scaffolding PP6 subunit. May have an important role in maintaining immune self-tolerance. Ref.1 Ref.3 |
| Subunit structure | Protein phosphatase 6 (PP6) holoenzyme is proposed to be a heterotrimeric complex formed by the catalytic subunit, a SAPS domain-containing subunit (PP6R) and an ankyrin repeat-domain containing regulatory subunit (ARS). Interacts with PPP6C and ANKRD28. Ref.10 |
| Subcellular location | |
| Tissue specificity | Expressed in skeletal muscle, placenta, heart, pancreas, testis, brain, lung, liver, kidney, spleen, thymus, prostate, small intestine, colon and leukocytes. Ref.1 Ref.3 |
| Sequence similarities | Belongs to the SAPS family. |
| Sequence caution | The sequence AAZ99639.2 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. The sequence BAA91978.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. The sequence BAB13384.2 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened. The sequence BAB71396.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Cytoplasm Nucleus |
| Coding sequence diversity | Alternative splicing Polymorphism |
| PTM | Phosphoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | regulation of phosphoprotein phosphatase activity Inferred from direct assay PubMed 16716191. Source: MGI |
| Cellular_component | cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell nucleusInferred from electronic annotation. Source: UniProtKB-SubCell |
| Complete GO annotation... | |
Binary interactions
With | Entry | #Exp. | IntAct | Notes |
|---|---|---|---|---|
| ANKRD28 | O15084 | 3 | EBI-355498,EBI-359567 | |
| PPP6C | O00743 | 2 | EBI-355498,EBI-359751 |
Alternative products
| This entry describes 6 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q5H9R7-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q5H9R7-2) The sequence of this isoform differs from the canonical sequence as follows: 544-549: Missing. | ||||||
| Isoform 3 (identifier: Q5H9R7-3) Also known as: B; C11orf23b; SAPLb; The sequence of this isoform differs from the canonical sequence as follows: 326-376: Missing. 516-544: Missing. 857-873: RTGQPSAPGDTSVNGPV → SGVEIPALPGQWSQQ | ||||||
| Isoform 4 (identifier: Q5H9R7-4) Also known as: A; C11orf23a; SAPLa; The sequence of this isoform differs from the canonical sequence as follows: 326-376: Missing. 516-544: Missing. | ||||||
| Isoform 5 (identifier: Q5H9R7-5) The sequence of this isoform differs from the canonical sequence as follows: 817-817: S → RVLKSYR | ||||||
| Isoform 6 (identifier: Q5H9R7-6) The sequence of this isoform differs from the canonical sequence as follows: 516-544: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 873 | 873 | Serine/threonine-protein phosphatase 6 regulatory subunit 3 | PRO_0000046100 | |||||
Amino acid modifications | |||||||||
| Modified residue | 579 | 1 | Phosphoserine Ref.9 Ref.14 Ref.15 Ref.17 | ||||||
| Modified residue | 617 | 1 | Phosphoserine Ref.8 Ref.11 Ref.13 Ref.14 Ref.15 Ref.17 | ||||||
| Modified residue | 722 | 1 | Phosphoserine Ref.12 | ||||||
| Modified residue | 853 | 1 | Phosphoserine By similarity | ||||||
Natural variations | |||||||||
| Alternative sequence | 326 – 376 | 51 | Missing in isoform 3 and isoform 4. | VSP_017140 | |||||
| Alternative sequence | 516 – 544 | 29 | Missing in isoform 3, isoform 4 and isoform 6. | VSP_017141 | |||||
| Alternative sequence | 544 – 549 | 6 | Missing in isoform 2. | VSP_017142 | |||||
| Alternative sequence | 817 | 1 | S → RVLKSYR in isoform 5. | VSP_017143 | |||||
| Alternative sequence | 857 – 873 | 17 | RTGQP…VNGPV → SGVEIPALPGQWSQQ in isoform 3. | VSP_017144 | |||||
| Natural variant | 842 | 1 | A → V. Corresponds to variant rs34009811 [ dbSNP | Ensembl ]. | VAR_057720 | |||||
Experimental info | |||||||||
| Sequence conflict | 292 | 1 | P → S in CAH18675. Ref.5 | ||||||
| Sequence conflict | 443 | 1 | M → V in BAB71396. Ref.7 | ||||||
| Sequence conflict | 477 | 1 | N → S in CAI45957. Ref.5 | ||||||
| Sequence conflict | 677 | 1 | L → P in CAI45957. Ref.5 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "The sequence and gene characterization of a 400-kb candidate region for IDDM4 on chromosome 11q13." Twells R.C.J., Metzker M.L., Brown S.D., Cox R., Garey C., Hammond H., Hey P.J., Levy E., Nakagawa Y., Philips M.S., Todd J.A., Hess J.F. Genomics 72:231-242(2001) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 3 AND 4), FUNCTION, TISSUE SPECIFICITY. |
| [2] | Guergnon J., Stefansson B., Brautigan D.L. Submitted (SEP-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), SEQUENCE REVISION. |
| [3] | "Protein phosphatase 6 subunit with conserved Sit4-associated protein domain targets IkappaBepsilon." Stefansson B., Brautigan D.L. J. Biol. Chem. 281:22624-22634(2006) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 226-873 (ISOFORM 1), FUNCTION, SUBCELLULAR LOCATION, TISSUE SPECIFICITY. |
| [4] | "Prediction of the coding sequences of unidentified human genes. XVIII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro." Nagase T., Kikuno R., Nakayama M., Hirosawa M., Ohara O. DNA Res. 7:273-281(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 5). Tissue: Brain. |
| [5] | "The full-ORF clone resource of the German cDNA consortium." Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., Wiemann S., Schupp I. BMC Genomics 8:399-399(2007) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 620-873 (ISOFORMS 1/2/4/6). Tissue: Colon carcinoma, Melanoma and Seminal plasma. |
| [6] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 6), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 650-873 (ISOFORMS 1/2/4/6). Tissue: Muscle. |
| [7] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 221-873 (ISOFORM 1). Tissue: Placenta and Testis. |
| [8] | "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks." Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M. Cell 127:635-648(2006) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-617, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [9] | "A probability-based approach for high-throughput protein phosphorylation analysis and site localization." Beausoleil S.A., Villen J., Gerber S.A., Rush J., Gygi S.P. Nat. Biotechnol. 24:1285-1292(2006) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-579, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [10] | "Protein phosphatase 6 regulatory subunits composed of ankyrin repeat domains." Stefansson B., Ohama T., Daugherty A.E., Brautigan D.L. Biochemistry 47:1442-1451(2008) [PubMed] [Europe PMC] [Abstract] Cited for: SUBCELLULAR LOCATION, INTERACTION WITH PPP6C AND ANKRD28. |
| [11] | "Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle." Daub H., Olsen J.V., Bairlein M., Gnad F., Oppermann F.S., Korner R., Greff Z., Keri G., Stemmann O., Mann M. Mol. Cell 31:438-448(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-617, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [12] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-722, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [13] | "Large-scale proteomics analysis of the human kinome." Oppermann F.S., Gnad F., Olsen J.V., Hornberger R., Greff Z., Keri G., Mann M., Daub H. Mol. Cell. Proteomics 8:1751-1764(2009) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-617, MASS SPECTROMETRY. |
| [14] | "Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions." Mayya V., Lundgren D.H., Hwang S.-I., Rezaul K., Wu L., Eng J.K., Rodionov V., Han D.K. Sci. Signal. 2:RA46-RA46(2009) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-579 AND SER-617, MASS SPECTROMETRY. Tissue: Leukemic T-cell. |
| [15] | "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis." Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M. Sci. Signal. 3:RA3-RA3(2010) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-579 AND SER-617, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [16] | "Initial characterization of the human central proteome." Burkard T.R., Planyavsky M., Kaupe I., Breitwieser F.P., Buerckstuemmer T., Bennett K.L., Superti-Furga G., Colinge J. BMC Syst. Biol. 5:17-17(2011) [PubMed] [Europe PMC] [Abstract] Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. |
| [17] | "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation." Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J., Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V., Blagoev B. Sci. Signal. 4:RS3-RS3(2011) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-579 AND SER-617, MASS SPECTROMETRY. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AF264779 mRNA. Translation: AAG36934.1. AF264780 mRNA. Translation: AAG36935.1. DQ111954 mRNA. Translation: AAZ99639.2. Different initiation. AB046778 mRNA. Translation: BAB13384.2. Different initiation. AL834471 mRNA. Translation: CAD39130.1. CR749815 mRNA. Translation: CAH18675.1. CR933658 mRNA. Translation: CAI45957.1. BC007738 mRNA. Translation: AAH07738.2. BC105933 mRNA. Translation: AAI05934.1. BC105934 mRNA. Translation: AAI05935.1. BC107599 mRNA. Translation: AAI07600.1. AK001920 mRNA. Translation: BAA91978.1. Different initiation. AK057250 mRNA. Translation: BAB71396.1. Different initiation. |
| IPI | IPI00019540. IPI00030624. IPI00719345. IPI00719553. IPI00719725. IPI00719821. |
| RefSeq | NP_001157632.1. NM_001164160.1. NP_001157633.1. NM_001164161.1. NP_001157634.1. NM_001164162.1. NP_001157635.1. NM_001164163.1. NP_001157636.1. NM_001164164.1. NP_060782.2. NM_018312.4. |
| UniGene | Hs.503022. |
3D structure databases | |
| ProteinModelPortal | Q5H9R7. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q5H9R7. 11 interactions. |
PTM databases | |
| PhosphoSite | Q5H9R7. |
Polymorphism databases | |
| DMDM | 88941982. |
Proteomic databases | |
| PaxDb | Q5H9R7. |
| PRIDE | Q5H9R7. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000265636; ENSP00000265636; ENSG00000110075. ENST00000393800; ENSP00000377389; ENSG00000110075. ENST00000393801; ENSP00000377390; ENSG00000110075. ENST00000524845; ENSP00000431415; ENSG00000110075. ENST00000524904; ENSP00000433058; ENSG00000110075. ENST00000529710; ENSP00000437329; ENSG00000110075. |
| GeneID | 55291. |
| KEGG | hsa:55291. |
| UCSC | uc001onu.3. human. uc001onv.3. human. uc001onw.3. human. uc001onx.3. human. uc001ony.4. human. uc009ysh.3. human. |
Organism-specific databases | |
| CTD | 55291. |
| GeneCards | GC11P068229. |
| HGNC | HGNC:1173. PPP6R3. |
| HPA | CAB017183. |
| MIM | 610879. gene. |
| neXtProt | NX_Q5H9R7. |
| PharmGKB | PA25487. |
| HUGE | Search... |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG303042. |
| HOVERGEN | HBG069733. |
| KO | K15501. |
| OMA | PAKETGW. |
Gene expression databases | |
| ArrayExpress | Q5H9R7. |
| Bgee | Q5H9R7. |
| Genevestigator | Q5H9R7. |
Family and domain databases | |
| InterPro | IPR007587. SAPS. [Graphical view] |
| PANTHER | PTHR12634. PTHR12634. 1 hit. |
| Pfam | PF04499. SAPS. 2 hits. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChiTaRS | PPP6R3. human. |
| GenomeRNAi | 55291. |
| NextBio | 59478. |
| SOURCE | Search... |
Entry information
| Entry name | PP6R3_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q5H9R7 Secondary accession number(s): Q3B7I1 Q9NUY3 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 11 Human chromosome 11: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
