Q5H9F3 (BCORL_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
May 1, 2013.
Version 80.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: BCL-6 corepressor-like protein 1 Short name=BCoR-L1 Short name=BCoR-like protein 1 | ||
| Gene names |
| ||
| Organism | Homo sapiens (Human) [Reference proteome] | ||
| Taxonomic identifier | 9606 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo![]() |
Protein attributes
| Sequence length | 1711 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Function | Transcriptional corepressor. May specifically inhibit gene expression when recruited to promoter regions by sequence specific DNA-binding proteins such as BCL6. This repression may be mediated at least in part by histone deacetylase activities which can associate with this corepressor. Ref.5 |
| Subunit structure | Interacts with CTBP1. Interacts with HDAC4, HDAC5 and HDAC7. Ref.5 |
| Subcellular location | |
| Tissue specificity | Detected in testis and prostate. Detected at lower levels in peripheral blood leukocytes and spleen. Ref.5 |
| Sequence similarities | Belongs to the BCOR family. Contains 3 ANK repeats. |
| Sequence caution | The sequence BAC85922.1 differs from that shown. Reason: Erroneous initiation. |
Ontologies
| Keywords | |
|---|---|
| Biological process | Transcription Transcription regulation |
| Cellular component | Nucleus |
| Coding sequence diversity | Alternative splicing Polymorphism |
| Domain | ANK repeat Repeat |
| Molecular function | Chromatin regulator Repressor |
| PTM | Phosphoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| Biological_process | chromatin modification Inferred from electronic annotation. Source: UniProtKB-KW regulation of transcription, DNA-dependentInferred from electronic annotation. Source: UniProtKB-KW transcription, DNA-dependentInferred from electronic annotation. Source: UniProtKB-KW |
| Cellular_component | cytoplasm Inferred from direct assay. Source: HPA nucleusInferred from direct assay. Source: HPA plasma membraneInferred from direct assay. Source: HPA |
| Complete GO annotation... | |
Alternative products
| This entry describes 3 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q5H9F3-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q5H9F3-2) The sequence of this isoform differs from the canonical sequence as follows: 1230-1359: Missing. | ||||||
| Isoform 3 (identifier: Q5H9F3-3) The sequence of this isoform differs from the canonical sequence as follows: 1434-1434: A → AKGKGRWSQQ...LLQRAARLGY | ||||||
| Note: Contains a phosphoserine at position 1476. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 1711 | 1711 | BCL-6 corepressor-like protein 1 | PRO_0000312268 | |||||
Regions | |||||||||
| Repeat | 1455 – 1484 | 30 | ANK 1 | ||||||
| Repeat | 1488 – 1517 | 30 | ANK 2 | ||||||
| Repeat | 1521 – 1549 | 29 | ANK 3 | ||||||
| Motif | 1328 – 1336 | 9 | Nuclear localization signal Potential | ||||||
| Compositional bias | 198 – 649 | 452 | Pro-rich | ||||||
Amino acid modifications | |||||||||
| Modified residue | 613 | 1 | Phosphoserine Ref.6 | ||||||
| Modified residue | 1033 | 1 | Phosphoserine Ref.6 | ||||||
| Modified residue | 1162 | 1 | Phosphoserine Ref.6 | ||||||
Natural variations | |||||||||
| Alternative sequence | 1230 – 1359 | 130 | Missing in isoform 2. | VSP_029778 | |||||
| Alternative sequence | 1434 | 1 | A → AKGKGRWSQQKTRSPKSPTP VKPTEPCTPSKSRSASSEEA SESPTARQIPPEARRLIVNK NAGETLLQRAARLGY in isoform 3. | VSP_029779 | |||||
| Natural variant | 111 | 1 | F → L. Ref.2 Corresponds to variant rs4830173 [ dbSNP | Ensembl ]. | VAR_061020 | |||||
| Natural variant | 209 | 1 | G → S. Corresponds to variant rs5932715 [ dbSNP | Ensembl ]. | VAR_037467 | |||||
| Natural variant | 832 | 1 | G → D in a breast cancer sample; somatic mutation. Ref.7 | VAR_037468 | |||||
Experimental info | |||||||||
| Mutagenesis | 623 – 624 | 2 | DL → AS: Strongly reduced repressor activity. Interferes with CTBP1 binding. Ref.5 | ||||||
| Sequence conflict | 1564 | 1 | V → A in BAC85922. Ref.4 | ||||||
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "The DNA sequence of the human X chromosome." Ross M.T., Grafham D.V., Coffey A.J., Scherer S., McLay K., Muzny D., Platzer M., Howell G.R., Burrows C., Bird C.P., Frankish A., Lovell F.L., Howe K.L., Ashurst J.L., Fulton R.S., Sudbrak R., Wen G., Jones M.C. Bentley D.R.Nature 434:325-337(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA], ALTERNATIVE SPLICING. |
| [2] | "Characterization of long cDNA clones from human adult spleen. II. The complete sequences of 81 cDNA clones." Jikuya H., Takano J., Kikuno R., Hirosawa M., Nagase T., Nomura N., Ohara O. DNA Res. 10:49-57(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 16-1711 (ISOFORM 1), VARIANT LEU-111. Tissue: Spleen. |
| [3] | Rhodes S. Submitted (JUL-1999) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 566-1435 (ISOFORM 2). |
| [4] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1265-1711 (ISOFORM 2). Tissue: Amygdala. |
| [5] | "A novel corepressor, BCoR-L1, represses transcription through an interaction with CtBP." Pagan J.K., Arnold J., Hanchard K.J., Kumar R., Bruno T., Jones M.J., Richard D.J., Forrest A., Spurdle A., Verdin E., Crossley M., Fanciulli M., Chenevix-Trench G., Young D.B., Khanna K.K. J. Biol. Chem. 282:15248-15257(2007) [PubMed] [Europe PMC] [Abstract] Cited for: FUNCTION, SUBCELLULAR LOCATION, INTERACTION WITH CTBP1; HDAC4; HDAC5 AND HDAC7, MUTAGENESIS OF 623-ASP-LEU-624, TISSUE SPECIFICITY. |
| [6] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed] [Europe PMC] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-613; SER-1033 AND SER-1162, PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1476 (ISOFORM 3), MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [7] | "The consensus coding sequences of human breast and colorectal cancers." Sjoeblom T., Jones S., Wood L.D., Parsons D.W., Lin J., Barber T.D., Mandelker D., Leary R.J., Ptak J., Silliman N., Szabo S., Buckhaults P., Farrell C., Meeh P., Markowitz S.D., Willis J., Dawson D., Willson J.K.V. Velculescu V.E.Science 314:268-274(2006) [PubMed] [Europe PMC] [Abstract] Cited for: VARIANT [LARGE SCALE ANALYSIS] ASP-832. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AL034405 Genomic DNA. No translation available. Z82208, AL136450 Genomic DNA. Translation: CAI42768.1. Z82208, AL136450 Genomic DNA. Translation: CAI42769.1. Z82208 Genomic DNA. Translation: CAI42770.1. AL136450, Z82208 Genomic DNA. Translation: CAI42885.1. AL136450, Z82208 Genomic DNA. Translation: CAI42884.1. AK074089 mRNA. Translation: BAB84915.1. AL096777 mRNA. Translation: CAB46626.1. AK124676 mRNA. Translation: BAC85922.1. Different initiation. |
| IPI | IPI00329707. IPI00386077. IPI00844087. |
| RefSeq | NP_068765.3. NM_021946.4. |
| UniGene | Hs.496748. |
3D structure databases | |
| HSSP | HSSP built from PDB template 2MYO based on UniProtKB P62775. |
| ProteinModelPortal | Q5H9F3. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | 9606.ENSP00000218147. |
PTM databases | |
| PhosphoSite | Q5H9F3. |
Polymorphism databases | |
| DMDM | 74762178. |
Proteomic databases | |
| PaxDb | Q5H9F3. |
| PRIDE | Q5H9F3. |
Protocols and materials databases | |
| DNASU | 63035. |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000218147; ENSP00000218147; ENSG00000085185. ENST00000303743; ENSP00000307541; ENSG00000085185. ENST00000359304; ENSP00000352253; ENSG00000085185. ENST00000456822; ENSP00000399483; ENSG00000085185. ENST00000540052; ENSP00000437775; ENSG00000085185. |
| GeneID | 63035. |
| KEGG | hsa:63035. |
| UCSC | uc010nrd.1. human. uc022cdu.1. human. |
Organism-specific databases | |
| CTD | 63035. |
| GeneCards | GC0XP129115. |
| HGNC | HGNC:25657. BCORL1. |
| HPA | HPA031775. HPA031777. |
| MIM | 300688. gene. |
| neXtProt | NX_Q5H9F3. |
| GenAtlas | Search... |
Phylogenomic databases | |
| eggNOG | NOG300696. |
| HOVERGEN | HBG104815. |
| InParanoid | Q5H9F3. |
| OMA | DTKPKNQ. |
| OrthoDB | EOG4KKZ3H. |
| PhylomeDB | Q5H9F3. |
Gene expression databases | |
| ArrayExpress | Q5H9F3. |
| Bgee | Q5H9F3. |
| CleanEx | HS_BCORL1. |
| Genevestigator | Q5H9F3. |
Family and domain databases | |
| Gene3D | 1.25.40.20. 1 hit. |
| InterPro | IPR002110. Ankyrin_rpt. IPR020683. Ankyrin_rpt-contain_dom. [Graphical view] |
| Pfam | PF12796. Ank_2. 1 hit. [Graphical view] |
| SMART | SM00248. ANK. 2 hits. [Graphical view] |
| SUPFAM | SSF48403. ANK. 1 hit. |
| PROSITE | PS50297. ANK_REP_REGION. 1 hit. PS50088. ANK_REPEAT. 2 hits. [Graphical view] |
| ProtoNet | Search... |
Other | |
| ChiTaRS | BCORL1. human. |
| GenomeRNAi | 63035. |
| NextBio | 65531. |
| SOURCE | Search... |
Entry information
| Entry name | BCORL_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q5H9F3 Secondary accession number(s): B5MDQ8 Q9Y528 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome X Human chromosome X: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| MIM cross-references Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with
