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Protein

Vacuolar protein sorting-associated protein 13A

Gene

Vps13a

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

May play a role in the control of protein cycling through the trans-Golgi network to early and late endosomes, lysosomes and plasma membrane.By similarity

GO - Biological processi

  • locomotory behavior Source: MGI
  • nervous system development Source: MGI
  • protein transport Source: UniProtKB-KW
  • social behavior Source: MGI
Complete GO annotation...

Keywords - Biological processi

Protein transport, Transport

Names & Taxonomyi

Protein namesi
Recommended name:
Vacuolar protein sorting-associated protein 13A
Alternative name(s):
Chorea-acanthocytosis protein homolog
Chorein
Gene namesi
Name:Vps13aImported
Synonyms:ChacImported, Kiaa0986Imported
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 19

Organism-specific databases

MGIiMGI:2444304. Vps13a.

Subcellular locationi

GO - Cellular componenti

  • dense core granule Source: MGI
Complete GO annotation...

Pathology & Biotechi

Disruption phenotypei

Mice show defects in motor coordination, social investigation, erythrocyte morphology as well as size and morphology of the striatum. Provides a mouse model for chorea-acanthocytosis (CHAC) with a mild phenotype and late adult onset.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 31663166Vacuolar protein sorting-associated protein 13APRO_0000262948Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei831 – 8311PhosphothreonineCombined sources
Modified residuei835 – 8351PhosphoserineCombined sources

Keywords - PTMi

Phosphoprotein

Proteomic databases

EPDiQ5H8C4.
MaxQBiQ5H8C4.
PaxDbiQ5H8C4.
PRIDEiQ5H8C4.

PTM databases

iPTMnetiQ5H8C4.
PhosphoSiteiQ5H8C4.

Expressioni

Gene expression databases

BgeeiQ5H8C4.
CleanExiMM_VPS13A.
GenevisibleiQ5H8C4. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000068716.

Structurei

3D structure databases

ProteinModelPortaliQ5H8C4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati212 – 24534TPR 1Sequence analysisAdd
BLAST
Repeati373 – 40634TPR 2Sequence analysisAdd
BLAST
Repeati1806 – 184035TPR 3Sequence analysisAdd
BLAST
Repeati1999 – 203436TPR 4Sequence analysisAdd
BLAST
Repeati2716 – 275035TPR 5Sequence analysisAdd
BLAST
Repeati2852 – 289039TPR 6Sequence analysisAdd
BLAST

Sequence similaritiesi

Belongs to the VPS13 family.Sequence analysis
Contains 6 TPR repeats.Sequence analysis

Keywords - Domaini

Repeat, TPR repeat

Phylogenomic databases

eggNOGiKOG1809. Eukaryota.
COG5043. LUCA.
GeneTreeiENSGT00410000025397.
HOGENOMiHOG000218634.
HOVERGENiHBG079736.
InParanoidiQ5H8C4.
KOiK19525.
OMAiVEGHISS.
OrthoDBiEOG7S4X52.
PhylomeDBiQ5H8C4.
TreeFamiTF300316.

Family and domain databases

InterProiIPR015412. Autophagy-rel_C.
IPR009543. SHR-BD.
IPR026847. VPS13.
IPR031645. VPS13_C.
IPR031642. VPS13_mid_rpt.
IPR026854. VPS13_N.
IPR031646. VPS13_N2.
[Graphical view]
PANTHERiPTHR16166. PTHR16166. 1 hit.
PfamiPF09333. ATG_C. 1 hit.
PF12624. Chorein_N. 1 hit.
PF06650. SHR-BD. 1 hit.
PF16908. VPS13. 1 hit.
PF16909. VPS13_C. 1 hit.
PF16910. VPS13_mid_rpt. 2 hits.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 11 Publication (identifier: Q5H8C4-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MVFESVVVEV LNRFLGDYVV NLDESQLSLG IWKGAVALKN LVIKENALHE
60 70 80 90 100
LDVPFKVKVG HIGSLKLKIP WKNLYTQPVE AVLEEIFLLI VPSSRIQYDP
110 120 130 140 150
IKEEKQLMET KQQELKRIEK AKQKVFDKEK PREEKQDTFT EKLVTQIIQN
160 170 180 190 200
LQVQISSIHI RYEDDITNGD KPLSFGISLQ NISLQTTDQY WIPCLHDNTE
210 220 230 240 250
KLVRKLIRLD NLFAYWNVNS EMFYLNDYDE SLKALKNGIV NENIVPEGYD
260 270 280 290 300
FVFRPISASA KLQMNRRSDF DFSDPKINLA VDLHTIAIEF NKPQYFSLME
310 320 330 340 350
LLESIDMMTQ NQPYRKFKPS VPLHLHAKEW WAYAIHSILE VNVCPSLRMW
360 370 380 390 400
SWEHIRNHRY KMKRYREFYK KKLTSKKPSP EILMSLEELE KTLDVFNITI
410 420 430 440 450
ARQQAEVEAK KAGYKIYKEG VKDPEDNAGW FGWLWTWSES NANQQQDVKP
460 470 480 490 500
GILEEMLTPE EKSLLYEAIG YSETAVDPTL PKTFEALKFF VHLKSMSIVL
510 520 530 540 550
RENHQKPELL NVVVEGLSTS VVQRPGAQAI KFETKIDSFH ITGLPDDFKK
560 570 580 590 600
PHLLSSLDDT SLLQITFEIN PLNETVAQRC TIEAEPLEII YDARTVNSIV
610 620 630 640 650
EFFRPPKDVH LAQLTSVTLT KLEEFRAKTA TGLLYVIETQ KVLDLRINVK
660 670 680 690 700
ASYVIVPQYG NFSPTSNLLL LDLGHLKVSS KRRSLLPDVR PSEASLEDIM
710 720 730 740 750
HRAYDSFDIQ LTSIQLLYSR VGDNWKEARK LNVSTQHILI PMHVNVELSK
760 770 780 790 800
AMVFMDIKMP KFKISGKLPL VSLRISDKKL QGIMELLGSI PKPEPVTDVS
810 820 830 840 850
APARSFQIQA SALPVSHISQ KLIPLLEQPV TEDDSEEEFF DAPCSPLEEC
860 870 880 890 900
PQVSCRDKCT RQKKLQKKDC VMNLIQLRMR FEVAEVSIQF YHLVGDCELP
910 920 930 940 950
VLEMGALGLG TEAEFRTFDL KGSAFLKELW LKCPEYLDEN KKPVYLITTL
960 970 980 990 1000
DNTMEDLLTL EFMKVEKNAP NLNSTYNNVL QLIKVNFSSL DIHLHTEALL
1010 1020 1030 1040 1050
NTMNYLNNIL PELREKSASV SAAEPEDKGD IIKKLALKLP TNEDIITLQL
1060 1070 1080 1090 1100
LAELSCLQIF IQDQKQNISE IKIEGLDSEM IMKPLVTEIN AKLRNIIVLD
1110 1120 1130 1140 1150
SDKMAIYKKA LYITGKEVFS FKMISYMDAT AGYAYTDMSV VDIRVHLTVG
1160 1170 1180 1190 1200
CIEVVFITKF LYSILAFIDN FQAVKDALAE ATVQAAEMAA DGVKELARKS
1210 1220 1230 1240 1250
SRFALDVNIK APVVLIPQSP VSQNVFVADF GLITMKNIFV TVTETQSNIP
1260 1270 1280 1290 1300
PVIDLITIKL SKMRLYRSQF RNDTYQEVLD LLLPLNLEVI VERNLSWEWY
1310 1320 1330 1340 1350
KEVPCFNIKA QLKPMEFILS QEDLTTVFQT LHGNIWYGQD LSAPSSANKD
1360 1370 1380 1390 1400
PETMTSGVTS PPDHSPATVV TAAVVEVHPQ ASQAHTMLNV SFQTDYLTMA
1410 1420 1430 1440 1450
LYSPGPDEAS FTDVRDPSLE LAEFKLENII SSLKIYTDDS TVFSFSVKNC
1460 1470 1480 1490 1500
ILDDKRSHVM KATPRMIGLT VGFDKKDMVD IKYRKIKTFV VTDAVVQEMY
1510 1520 1530 1540 1550
VCASVEFLMT VAHIFFDAYM TSTALETSVQ TRTTREAPAQ ELGKWEMNIL
1560 1570 1580 1590 1600
IKNPEIVFVA DMTRNDAPAL VITTQCEICC KGEPTSNTVT AAIKDLQVRA
1610 1620 1630 1640 1650
CPFLPVKRKG KVTTVLQPCD LFYQATQLGR DPQMIDISVK SLTLKVSPVI
1660 1670 1680 1690 1700
INTIITITSA LYTTKETVPE ENTSNIAHLW DKKDTKNLKM WFLEESNESE
1710 1720 1730 1740 1750
KVVPTNEVMP GGETLNLRID SIFIVLEAGI GHRTVPMLLA KACFSGESKN
1760 1770 1780 1790 1800
WLSLINLHCH LELEVHYYNE MFGVWEPLLE PLEIDQTDDF RPWNLGIKMK
1810 1820 1830 1840 1850
KKAKEAIVES DSEAENYKVP EYKTAISFYS RDQLNITLSK CGLVMLNNLV
1860 1870 1880 1890 1900
EAFTEAATGS SSVFLRDLAP FMIFNSLGLT VSVSPSDSFS VLNVPLAKSY
1910 1920 1930 1940 1950
ELKNDESLSM DYVRTKDNDH FNAMTSLSSK LFFILLTPAN HSVADKIPLT
1960 1970 1980 1990 2000
KVGRRLYTVR HRESGVERSI ICQIDTVEGS KKVTIRSPVQ IKNHFSIPIS
2010 2020 2030 2040 2050
VFEGDTLLGI ASPENEFNIP LASYRSSLSL VPEDQDYQLC EGIDFEEIIK
2060 2070 2080 2090 2100
YDGQLLKKKC RSTNPSKKSF VINIVPEKDN LASLSVYSED GWDLPYVLHL
2110 2120 2130 2140 2150
WPPILIRNLL PYKVAYYIEG IENTVVTLSE GHSSQIYNVE MDQAKLHLKL
2160 2170 2180 2190 2200
LDYLNHDWKS EFYIRSSQQD INFINFTCLT EMEKSDLDIA IHMTYNTGQT
2210 2220 2230 2240 2250
VVAFHSPYWM VNKTNRMLQY KADGIHRKHP PNYTKPVLFS FQPNHFFNNN
2260 2270 2280 2290 2300
KVQLMVTDSE LSDQFSIDTV GSHGAIRCKG LKMEYQVGVT INLSSFNITR
2310 2320 2330 2340 2350
IVTFIPFYMI KNKSKYHISV AEEGSDKWLS LDLEQSIPFW PENASNILLI
2360 2370 2380 2390 2400
QVERSEDPPK RIYFNKQDNC ILLRLNNELG GIIAEVNLAE HSTVITFSDY
2410 2420 2430 2440 2450
HDGAATFLLI NHTKSDPVQY NQSSLGEIED SLPPGKAVYY TWADPVGSRK
2460 2470 2480 2490 2500
LKWSCGQSYG EVTHKDDMMT PISVGKKTIY LVSFFEGLQR IILFTEDPRV
2510 2520 2530 2540 2550
FKVTYESEKA ELAELEVVLA LQDVGISLVN NYTKQEVAYI GITSSDVVWE
2560 2570 2580 2590 2600
AKPKKKARWK PMSVKHTEKL EKEFREYTEA SPLEDKVVEL DNIPVRLTPS
2610 2620 2630 2640 2650
GNDMKILQPH VIPVRRNYLP ALKVEYNTSA HQSSFRIQIY RIQIQNQIHG
2660 2670 2680 2690 2700
AIFPFVFYPI KPPRSVTMDS APKPFTDVSI VMRSAGHSQI SRIKYFKVLI
2710 2720 2730 2740 2750
QEMDLSLDLG FVYALADLVT KAEVTEKTEV EHFHKDVEAF EQEYEVVSSV
2760 2770 2780 2790 2800
DQSQVNLFEY FHISPIKLHL SVSLSSGRDE AKDSEQHGGL IPVHSLNLLL
2810 2820 2830 2840 2850
KSIGATLTDV QDVVFKLAFF ELNYQFHTTS ELQSEVIRHY SKQAIKQMYV
2860 2870 2880 2890 2900
LILGLDVLGN PFGLIREFSE GVEAFFYEPY QGAIQGPEEF VEGMALGLKA
2910 2920 2930 2940 2950
LVGGAVGGLA GAASKITSAM AKGVAAMTMD EDYQQKRREA MNKQPAGLRE
2960 2970 2980 2990 3000
GITRGGKGLV SGFVSGITGI VTKPIKGAQK EGAAGFFKGV GKGLVGAVTR
3010 3020 3030 3040 3050
PTGGIIDMAS STFQGIKRAT ETSEVESLRP PRFFNEDGVI RPYRLRDGSG
3060 3070 3080 3090 3100
NQMLQVMENG RFAKYKYFTH VMINKTDMFM ITRRGVLFVT KGTFGQLTCE
3110 3120 3130 3140 3150
WQYTFDEFTK EPFIVHGRRL RIEAKERVKS VFHAKEFGKI VNFKTPEDAR
3160
WILTKLEEAR EPSPRL
Length:3,166
Mass (Da):359,401
Last modified:March 1, 2005 - v1
Checksum:i68EFBB87EF7833B0
GO
Isoform 21 Publication (identifier: Q5H8C4-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     3056-3061: VMENGR → ASKSLI
     3062-3166: Missing.

Show »
Length:3,061
Mass (Da):346,722
Checksum:i4377D51797F753ED
GO

Sequence cautioni

The sequence BAE22761.1 differs from that shown.Intron retention.Curated

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei3056 – 30616VMENGR → ASKSLI in isoform 2. 1 PublicationVSP_052241
Alternative sequencei3062 – 3166105Missing in isoform 2. 1 PublicationVSP_052242Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB115421 mRNA. Translation: BAD89296.1.
AK052697 mRNA. Translation: BAC35101.1.
AK135983 mRNA. Translation: BAE22761.1. Sequence problems.
AK142462 mRNA. Translation: BAE25075.1.
AK220362 mRNA. Translation: BAD90423.1.
BC050055 mRNA. Translation: AAH50055.1.
CCDSiCCDS37929.1. [Q5H8C4-1]
RefSeqiNP_766616.2. NM_173028.4. [Q5H8C4-1]
XP_006527188.1. XM_006527125.2. [Q5H8C4-1]
XP_006527189.1. XM_006527126.2. [Q5H8C4-2]
UniGeneiMm.211963.

Genome annotation databases

EnsembliENSMUST00000068156; ENSMUSP00000068716; ENSMUSG00000046230. [Q5H8C4-1]
GeneIDi271564.
KEGGimmu:271564.
UCSCiuc008gwv.2. mouse. [Q5H8C4-1]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB115421 mRNA. Translation: BAD89296.1.
AK052697 mRNA. Translation: BAC35101.1.
AK135983 mRNA. Translation: BAE22761.1. Sequence problems.
AK142462 mRNA. Translation: BAE25075.1.
AK220362 mRNA. Translation: BAD90423.1.
BC050055 mRNA. Translation: AAH50055.1.
CCDSiCCDS37929.1. [Q5H8C4-1]
RefSeqiNP_766616.2. NM_173028.4. [Q5H8C4-1]
XP_006527188.1. XM_006527125.2. [Q5H8C4-1]
XP_006527189.1. XM_006527126.2. [Q5H8C4-2]
UniGeneiMm.211963.

3D structure databases

ProteinModelPortaliQ5H8C4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000068716.

PTM databases

iPTMnetiQ5H8C4.
PhosphoSiteiQ5H8C4.

Proteomic databases

EPDiQ5H8C4.
MaxQBiQ5H8C4.
PaxDbiQ5H8C4.
PRIDEiQ5H8C4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000068156; ENSMUSP00000068716; ENSMUSG00000046230. [Q5H8C4-1]
GeneIDi271564.
KEGGimmu:271564.
UCSCiuc008gwv.2. mouse. [Q5H8C4-1]

Organism-specific databases

CTDi23230.
MGIiMGI:2444304. Vps13a.
RougeiSearch...

Phylogenomic databases

eggNOGiKOG1809. Eukaryota.
COG5043. LUCA.
GeneTreeiENSGT00410000025397.
HOGENOMiHOG000218634.
HOVERGENiHBG079736.
InParanoidiQ5H8C4.
KOiK19525.
OMAiVEGHISS.
OrthoDBiEOG7S4X52.
PhylomeDBiQ5H8C4.
TreeFamiTF300316.

Miscellaneous databases

NextBioi393478.
PROiQ5H8C4.
SOURCEiSearch...

Gene expression databases

BgeeiQ5H8C4.
CleanExiMM_VPS13A.
GenevisibleiQ5H8C4. MM.

Family and domain databases

InterProiIPR015412. Autophagy-rel_C.
IPR009543. SHR-BD.
IPR026847. VPS13.
IPR031645. VPS13_C.
IPR031642. VPS13_mid_rpt.
IPR026854. VPS13_N.
IPR031646. VPS13_N2.
[Graphical view]
PANTHERiPTHR16166. PTHR16166. 1 hit.
PfamiPF09333. ATG_C. 1 hit.
PF12624. Chorein_N. 1 hit.
PF06650. SHR-BD. 1 hit.
PF16908. VPS13. 1 hit.
PF16909. VPS13_C. 1 hit.
PF16910. VPS13_mid_rpt. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), DISRUPTION PHENOTYPE.
    Strain: C57BL/6JImported.
    Tissue: BrainImported.
  2. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-368; 875-1696 AND 1896-2816.
    Strain: C57BL/6JImported.
    Tissue: EggImported, KidneyImported and StomachImported.
  3. "Prediction of the coding sequences of mouse homologues of KIAA gene. The complete nucleotide sequences of mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries."
    Okazaki N., Kikuno R.F., Ohara R., Inamoto S., Nagase T., Ohara O., Koga H.
    Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 2141-3166 (ISOFORM 2).
    Tissue: Fetal brainImported.
  4. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 2477-3166 (ISOFORM 1).
    Tissue: PancreasImported.
  5. Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT THR-831 AND SER-835, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Brain, Brown adipose tissue, Heart, Kidney, Liver, Lung, Pancreas, Spleen and Testis.

Entry informationi

Entry nameiVP13A_MOUSE
AccessioniPrimary (citable) accession number: Q5H8C4
Secondary accession number(s): Q3UQG7
, Q3UX03, Q5DU08, Q80YV7, Q8C722
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: March 1, 2005
Last modified: May 11, 2016
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.