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Q5H6Q3 (GLGB2_XANOR) Reviewed, UniProtKB/Swiss-Prot

Last modified June 11, 2014. Version 72. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
1,4-alpha-glucan branching enzyme GlgB 2

EC=2.4.1.18
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase 2
Alpha-(1->4)-glucan branching enzyme 2
Glycogen branching enzyme 2
Short name=BE 2
Gene names
Name:glgB2
Ordered Locus Names:XOO0113
OrganismXanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85) [Complete proteome] [HAMAP]
Taxonomic identifier291331 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas

Protein attributes

Sequence length720 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position By similarity. HAMAP-Rule MF_00685

Catalytic activity

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain. HAMAP-Rule MF_00685

Pathway

Glycan biosynthesis; glycogen biosynthesis. HAMAP-Rule MF_00685

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00685

Sequence similarities

Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.

Sequence caution

The sequence AAW73367.1 differs from that shown. Reason: Erroneous initiation.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 7207201,4-alpha-glucan branching enzyme GlgB 2 HAMAP-Rule MF_00685
PRO_0000188769

Sites

Active site3981Nucleophile By similarity
Active site4511Proton donor By similarity

Sequences

Sequence LengthMass (Da)Tools
Q5H6Q3 [UniParc].

Last modified May 10, 2005. Version 2.
Checksum: 1890F5F66BAE82D1

FASTA72079,509
        10         20         30         40         50         60 
MSQTLQALAD GLPVDAFAVL GPHPLADGRR QVRVLAPGAE AMGLIDSRGK LLARMQASAI 

        70         80         90        100        110        120 
DGVFEGILSI EGPYRLRIVW PDMVQEIEDP YAFAVTLDES LLLQIAAGDG QALRRALGAQ 

       130        140        150        160        170        180 
HVQCGEVPGV RFAVWAPHAQ RVAVVGDFNG WDVRRHPMRQ RIGGFWELFL PRVEAGPRYK 

       190        200        210        220        230        240 
YAVTAADGRV LLKADPVARQ TELPPATASV VPGTDTFAWT DAAWMAKRDP SAVPAPLSIY 

       250        260        270        280        290        300 
EVHAASWRRD GHNQPLDWPT LAEQLIPYVQ QLRFTHIELL PITEHPFGGS WGYQPLGLYA 

       310        320        330        340        350        360 
PTARHGSPDG FAQFVDACHR AGIGVILDWV SAHFPDDAHG LAQFDGAALY EHADPREGMH 

       370        380        390        400        410        420 
RDWNTLIYNY GRPEVTAYLL GSALEWIDHY HLDGLRVDAV ASMLYRDYGR AEGEWVPNAH 

       430        440        450        460        470        480 
GGRENLEAVA FLRQLNREIA AHFPGVLTIA EESTAWPGVT AAISDGGLGF THKWNMGWMH 

       490        500        510        520        530        540 
DTLSYMQRDP AERAHHHSQL TFGLVYAFDE RFVLPISHDE VVHGTGGLLG QMPGDDWRRF 

       550        560        570        580        590        600 
ANLRAYLALM WAHPGDKLLF MGAEFGQWAD WNHDQSLDWH LLEGARHRGV QLLVGDLNAT 

       610        620        630        640        650        660 
LRRTPALYRG THRAKGFDWS VADDARNSVL AFIRHDPDGG GVPLLAVSNL TAQPLHDYGV 

       670        680        690        700        710        720 
GVPRAGAWRE ILNTDSAHYG GSNLGNSGRL ATEPMGMHGH AQRLRLTLPP LATIYLQAEK 

« Hide

References

[1]"The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice."
Lee B.-M., Park Y.-J., Park D.-S., Kang H.-W., Kim J.-G., Song E.-S., Park I.-C., Yoon U.-H., Hahn J.-H., Koo B.-S., Lee G.-B., Kim H., Park H.-S., Yoon K.-O., Kim J.-H., Jung C.-H., Koh N.-H., Seo J.-S., Go S.-J.
Nucleic Acids Res. 33:577-586(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: KACC10331 / KXO85.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE013598 Genomic DNA. Translation: AAW73367.1. Different initiation.

3D structure databases

ProteinModelPortalQ5H6Q3.
SMRQ5H6Q3. Positions 115-720.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING291331.XOO0113.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAW73367; AAW73367; XOO0113.
PATRIC24098915. VBIXanOry111333_0119.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0296.
HOGENOMHOG000283037.
OMAALEWIEH.
OrthoDBEOG6JX7GT.

Enzyme and pathway databases

BioCycXORY291331:GJBV-104-MONOMER.
UniPathwayUPA00164.

Family and domain databases

Gene3D2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPMF_00685. GlgB.
InterProIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFPIRSF000463. GlgB. 1 hit.
SUPFAMSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 1 hit.
TIGRFAMsTIGR01515. branching_enzym. 1 hit.
ProtoNetSearch...

Entry information

Entry nameGLGB2_XANOR
AccessionPrimary (citable) accession number: Q5H6Q3
Entry history
Integrated into UniProtKB/Swiss-Prot: May 10, 2005
Last sequence update: May 10, 2005
Last modified: June 11, 2014
This is version 72 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

PATHWAY comments

Index of metabolic and biosynthesis pathways

Glycosyl hydrolases

Classification of glycosyl hydrolase families and list of entries