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Q5H6H2

- GLGB1_XANOR

UniProt

Q5H6H2 - GLGB1_XANOR

Protein

1,4-alpha-glucan branching enzyme GlgB 1

Gene

glgB1

Organism
Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 73 (01 Oct 2014)
      Sequence version 1 (01 Mar 2005)
      Previous versions | rss
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    Functioni

    Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.UniRule annotation

    Catalytic activityi

    Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei411 – 4111NucleophileUniRule annotation
    Active sitei464 – 4641Proton donorUniRule annotation

    GO - Molecular functioni

    1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
    2. cation binding Source: InterPro
    3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

    GO - Biological processi

    1. glycogen biosynthetic process Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Glycosyltransferase, Transferase

    Keywords - Biological processi

    Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

    Enzyme and pathway databases

    BioCyciXORY291331:GJBV-178-MONOMER.
    UniPathwayiUPA00164.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    1,4-alpha-glucan branching enzyme GlgB 1UniRule annotation (EC:2.4.1.18UniRule annotation)
    Alternative name(s):
    1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase 1UniRule annotation
    Alpha-(1->4)-glucan branching enzyme 1UniRule annotation
    Glycogen branching enzyme 1UniRule annotation
    Short name:
    BE 1UniRule annotation
    Gene namesi
    Name:glgB1UniRule annotation
    Ordered Locus Names:XOO0194
    OrganismiXanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85)
    Taxonomic identifieri291331 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
    ProteomesiUP000006735: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 7327321,4-alpha-glucan branching enzyme GlgB 1PRO_0000188768Add
    BLAST

    Interactioni

    Subunit structurei

    Monomer.UniRule annotation

    Protein-protein interaction databases

    STRINGi291331.XOO0194.

    Structurei

    3D structure databases

    ProteinModelPortaliQ5H6H2.
    SMRiQ5H6H2. Positions 120-731.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0296.
    HOGENOMiHOG000283037.
    OMAiGELSHAW.
    OrthoDBiEOG6JX7GT.

    Family and domain databases

    Gene3Di2.60.40.10. 2 hits.
    2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    HAMAPiMF_00685. GlgB.
    InterProiIPR006048. A-amylase_b_C.
    IPR006407. GlgB.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR004193. Glyco_hydro_13_N.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    IPR013783. Ig-like_fold.
    IPR014756. Ig_E-set.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    PF02806. Alpha-amylase_C. 1 hit.
    PF02922. CBM_48. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000463. GlgB. 1 hit.
    SUPFAMiSSF51445. SSF51445. 1 hit.
    SSF81296. SSF81296. 1 hit.
    TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q5H6H2-1 [UniParc]FASTAAdd to Basket

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    MMSGVMTAVS NRWDPGVIRA LAEARHGDAF AVLGAHRTDT GRVLRTYLPG    50
    AERVSAVLDD GQTIALEAGP EPGLFAGDLP AQGGYRLRIG WPGGEQDTAD 100
    PYAFGPQLSD FDLHLISEGH HLQLADALGA NVVEVDGVRG TRFAVWAPNA 150
    SRVAVVGDFN SWDARRHPMR LRHQSGVWEL FVPDVGPGAH YKYQLRGPHG 200
    HELPAKADPV ARRAELAPGT ASIVADPTPY QWSDDGWMAT RARRQAHDAP 250
    MSVYEMHAGS WLREEGVDLD WDGLADHLIP YVADMGFTHV ELMPVTEHPF 300
    GGSWGYQPLG LFAPTARFGT PDGFARFVDR CHREGIGVIV DWVPAHFPTD 350
    AHGLAHFDGT ALYEHADPRE GFHRDWNTLI YNHGRREVSG FLIASAMEFL 400
    QRYHVDGLRV DAVASMLYRD YSRNAGEWVP NIHGGRENYE TIAFLRRLNA 450
    LVREHTPGAV MIAEESTAFP GVTADVAHGG LGFHYKWNMG WMHDTLHYAS 500
    LDPIYRRYHH GELTFSMVYA YSERFVLPIS HDEVVHGKGS LLGRMPGDDW 550
    QRFANLRAYL GFMFTHPGRK LLFMGCEFGQ PTEWNHDSGL PWHLLDDPRH 600
    RGVQTLVRDV NRLYVQYPAL HAHDDDPSGF AWVVGDDAGN SVVAFLRKGK 650
    RGDAPVLVVI NFTPVVQHGY RIGVPQGGQW REVFNSDAGI YGGANLGNGG 700
    IVTAEQQSMH GHAHALPLLL PPLGAIVLTP PG 732
    Length:732
    Mass (Da):80,923
    Last modified:March 1, 2005 - v1
    Checksum:i5374208FE2C9B3F5
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE013598 Genomic DNA. Translation: AAW73448.1.

    Genome annotation databases

    EnsemblBacteriaiAAW73448; AAW73448; XOO0194.
    PATRICi24099124. VBIXanOry111333_0226.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE013598 Genomic DNA. Translation: AAW73448.1 .

    3D structure databases

    ProteinModelPortali Q5H6H2.
    SMRi Q5H6H2. Positions 120-731.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 291331.XOO0194.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAW73448 ; AAW73448 ; XOO0194 .
    PATRICi 24099124. VBIXanOry111333_0226.

    Phylogenomic databases

    eggNOGi COG0296.
    HOGENOMi HOG000283037.
    OMAi GELSHAW.
    OrthoDBi EOG6JX7GT.

    Enzyme and pathway databases

    UniPathwayi UPA00164 .
    BioCyci XORY291331:GJBV-178-MONOMER.

    Family and domain databases

    Gene3Di 2.60.40.10. 2 hits.
    2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    HAMAPi MF_00685. GlgB.
    InterProi IPR006048. A-amylase_b_C.
    IPR006407. GlgB.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR004193. Glyco_hydro_13_N.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    IPR013783. Ig-like_fold.
    IPR014756. Ig_E-set.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    PF02806. Alpha-amylase_C. 1 hit.
    PF02922. CBM_48. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000463. GlgB. 1 hit.
    SUPFAMi SSF51445. SSF51445. 1 hit.
    SSF81296. SSF81296. 1 hit.
    TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: KACC10331 / KXO85.

    Entry informationi

    Entry nameiGLGB1_XANOR
    AccessioniPrimary (citable) accession number: Q5H6H2
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 10, 2005
    Last sequence update: March 1, 2005
    Last modified: October 1, 2014
    This is version 73 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Glycosyl hydrolases
      Classification of glycosyl hydrolase families and list of entries
    2. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3