Xylose isomerase 1 - Xanthomonas oryzae pv. oryzae

Contribute

Read comments (0) or add your own

Reviewed, UniProtKB/Swiss-Prot Q5GYQ7 (XYLA1_XANOR)

Last modified September 22, 2009. Version 25. History...

Clusters with 100%, 90%, 50% identity |

Documents (1) |

Third-party data |

Customize display

text xml rdf/xml gff fasta

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein names

Recommended name:
Xylose isomerase 1
EC=5.3.1.5

Gene names

Name:	xylA1
Ordered Locus Names:	XOO2910

Organism

Xanthomonas oryzae pv. oryzae [Complete proteome] [HAMAP]

Taxonomic identifier

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Xanthomonadales › Xanthomonadaceae › Xanthomonas

Protein attributes

Sequence length	445 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Catalytic activity	D-xylose = D-xylulose. HAMAP MF_00455
Cofactor	Binds 2 magnesium ions per subunit By similarity.
Subunit structure	Homotetramer By similarity.
Subcellular location	Cytoplasm By similarity.
Sequence similarities	Belongs to the xylose isomerase family.

Ontologies

Keywords
Biological process	Carbohydrate metabolism Pentose shunt Xylose metabolism
Cellular component	Cytoplasm
Ligand	Magnesium Metal-binding
Molecular function	Isomerase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	D-xylose metabolic process Inferred from electronic annotation. Source: HAMAP pentose-phosphate shunt Inferred from electronic annotation. Source: HAMAP
Cellular component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular function	magnesium ion binding Inferred from electronic annotation. Source: HAMAP xylose isomerase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

445

Xylose isomerase 1 HAMAP MF_00455

PRO_0000236978

Sites

Active site

1

By similarity

Active site

1

By similarity

Metal binding

1

Magnesium 1 By similarity

Metal binding

1

Magnesium 1 By similarity

Metal binding

1

Magnesium 2 By similarity

Metal binding

1

Magnesium 2 By similarity

Metal binding

1

Magnesium 1 By similarity

Metal binding

1

Magnesium 2 By similarity

Metal binding

1

Magnesium 2 By similarity

Metal binding

1

Magnesium 1 By similarity

Sequences

Sequence

Length

Mass (Da)

Tools

Q5GYQ7-1 [UniParc].

Last modified March 1, 2005. Version 1.
Checksum: F5EEF245267F746E
Show »

445

48,753

        10         20         30         40         50         60 
MSNTVYIGAK EYFPGIGKIG FEGRESDNPL AFKVYDANKT IGDKTMAEHL RFAVAYWHSF 

        70         80         90        100        110        120 
CGNGADPFGP GTRAYPWDVG NSALARAEAK SDAAFEFFTK LGVPYYCFHD IDLSPDADDI 

       130        140        150        160        170        180 
GEYESNLKHM VGVAKQRQAD TGIKLLWGTA NLFSHPRYMN GASTNPDFNV VARAAVQVKA 

       190        200        210        220        230        240 
AIDATVELGG ENYVFWGGRE GYACLHNTQM KREQDNMARF LTLARDYGRS IGFTGNFLIE 

       250        260        270        280        290        300 
PKPMEPMKHQ YDFDSATVIG FLRQHGLDQD FKLNIEANHA TLSGHSFEHD LQVASDAGLL 

       310        320        330        340        350        360 
GSIDANRGNP QNGWDTDQFP TDLYDTVGAM LVVLRQGGLA PGGLNFDAKV RRESSDPQDL 

       370        380        390        400        410        420 
FLAHIGGMDA FARGLEVANA LLTSSPLEQW RAERYASFDN GTGADFAAGK ITLADLAAHA 

       430        440 
AGNAPKQISG RQEAYENLIN QYLTR

References

[1]

"The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice."
Lee B.-M., Park Y.-J., Park D.-S., Kang H.-W., Kim J.-G., Song E.-S., Park I.-C., Yoon U.-H., Hahn J.-H., Koo B.-S., Lee G.-B., Kim H., Park H.-S., Yoon K.-O., Kim J.-H., Jung C.-H., Koh N.-H., Seo J.-S., Go S.-J.
Nucleic Acids Res. 33:577-586(2005) [PubMed: 15673718] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: KACC10331 / KXO85.

Cross-references

Sequence databases
	AE013598 Genomic DNA. Translation: AAW76164.1.
RefSeq	YP_201549.1. YP_203056.6.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	3262619. 3263051.
GenomeReviews	Gene locus XOO2910 in contig AE013598_GR.
KEGG	xoo:XOO2910.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	Q5GYQ7.
Enzyme and pathway databases
BioCyc	XORY291331:XOO2910-MON.
Family and domain databases
HAMAP	MF_00455. [Tree]
InterPro	IPR013022. Xyl_isomerase-like_TIM-brl. IPR012307. Xyl_isomerase_TIM-brl. IPR013452. Xylose_isom_bac. IPR001998. Xylose_isomerase. IPR018115. Xylose_isomerase_AS. [Graphical view]
Gene3D	G3DSA:3.20.20.150. Xyl_isomerase-like_TIM-brl. 1 hit.
Pfam	PF01261. AP_endonuc_2. 1 hit. [Graphical view]
PRINTS	PR00688. XYLOSISMRASE.
TIGRFAMs	TIGR02630. xylose_isom_A. 1 hit.
PROSITE	PS51415. XYLOSE_ISOMERASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

XYLA1_XANOR

Accession

Primary (citable) accession number: Q5GYQ7

Entry history

Integrated into UniProtKB/Swiss-Prot:	May 30, 2006
Last sequence update:	March 1, 2005
Last modified:	September 22, 2009
This is version 25 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents