Q5GWF4 (SYQ_XANOR) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Glutamine--tRNA ligase
EC=6.1.1.18

Alternative name(s):
Glutaminyl-tRNA synthetase
Short name=GlnRS

Gene names

Name:	glnS
Ordered Locus Names:	XOO3713

Organism

Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85) [Complete proteome] [HAMAP]

Taxonomic identifier

291331 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Xanthomonadales › Xanthomonadaceae › Xanthomonas › Xanthomonas oryzae › Xanthomonas oryzae pv. oryzae

Protein attributes

Sequence length	579 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	ATP + L-glutamine + tRNA(Gln) = AMP + diphosphate + L-glutaminyl-tRNA(Gln). HAMAP-Rule MF_00126
Subunit structure	Monomer By similarity.
Subcellular location	Cytoplasm By similarity.
Sequence similarities	Belongs to the class-I aminoacyl-tRNA synthetase family.

Ontologies

Keywords
Biological process	Protein biosynthesis
Cellular component	Cytoplasm
Ligand	ATP-binding Nucleotide-binding
Molecular function	Aminoacyl-tRNA synthetase Ligase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	glutaminyl-tRNA aminoacylation Inferred from electronic annotation. Source: InterPro glutamyl-tRNA aminoacylation Inferred from electronic annotation. Source: HAMAP
Cellular_component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	ATP binding Inferred from electronic annotation. Source: HAMAP glutamine-tRNA ligase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 579	579	Glutamine--tRNA ligase HAMAP-Rule MF_00126		PRO_0000242882
Regions
	Motif	41 – 51	11	"HIGH" region HAMAP-Rule MF_00126
	Motif	292 – 296	5	"KMSKS" region HAMAP-Rule MF_00126
Sites
	Binding site	295	1	ATP By similarity

Sequences

	Sequence		Length	Mass (Da)
	Q5GWF4 [UniParc]. Last modified March 1, 2005. Version 1. Checksum: F01C8EEEB9994A80	FASTA	579	65,668
	10 20 30 40 50 60 MSETLATDAT TPAEKKDFIR QIVREDLASG KHTVIRTRFP PEPNGYLHIG HAKAICLDFG 70 80 90 100 110 120 LAAEFGGLCN LRLDDTNPAK EDPEFAAAIQ DDVRWLGYDW AQLRHASDYF EVYYLAAQKL 130 140 150 160 170 180 IRDGHAFVCD LSAEQVRQYR GTLTEPGRHS PFRERSVEEN LDLFQRMRAG EFPDGARTLR 190 200 210 220 230 240 AKIDMASGNI NLRDPALYRI KHVEHQNTGN AWPIYPMYDF AHSLGDAVEG ITHSLCTLEF 250 260 270 280 290 300 EDHRPLYDWC VDKVDLVGHP ELLQPLLDKG LPREAAKPRQ IEFSRLNINY TVMSKRKLTA 310 320 330 340 350 360 LVEEQLVDGW DDPRMYTLQG LRRRGYTPAA MRLFVERVGI SKQNSLIDFS VLEGCLREDL 370 380 390 400 410 420 DAAAARRMAV IDPLKLVLTN LPEGHTETLQ FSNHPKDESF GTREVPFARV LWIEREDFAE 430 440 450 460 470 480 VPPKGWKRLV PGGEIRLRGA GIARVDEVIK NADGDIVALR GWLDPESRPG MEGANRKVKG 490 500 510 520 530 540 TIHWVSAAHA VEAEIRLYDR LFSVEKPDDE SEGKTYRDYL NPESKRNVRG YVEPSAALAA 550 560 570 PEQAFQFERT GYFVADSRDH SASTPVFNRS VTLRDAWAK

References

[1]

"The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice." Lee B.-M., Park Y.-J., Park D.-S., Kang H.-W., Kim J.-G., Song E.-S., Park I.-C., Yoon U.-H., Hahn J.-H., Koo B.-S., Lee G.-B., Kim H., Park H.-S., Yoon K.-O., Kim J.-H., Jung C.-H., Koh N.-H., Seo J.-S., Go S.-J. Nucleic Acids Res. 33:577-586(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: KACC10331 / KXO85.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE013598 Genomic DNA. Translation: AAW76967.1.
RefSeq	YP_202352.1. NC_006834.1.
3D structure databases
ProteinModelPortal	Q5GWF4.
SMR	Q5GWF4. Positions 17-576.
ModBase	Search...
Protein-protein interaction databases
STRING	291331.XOO3713.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAW76967; AAW76967; XOO3713.
GeneID	3264842.
KEGG	xoo:XOO3713.
PATRIC	24107000. VBIXanOry111333_4113.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0008.
KO	K01886.
OMA	RMPTIAG.
ProtClustDB	PRK05347.
Family and domain databases
Gene3D	1.10.1160.10. 1 hit. 2.40.240.10. 2 hits. 3.40.50.620. 2 hits.
HAMAP	MF_00126. Gln_tRNA_synth.
InterPro	IPR001412. aa-tRNA-synth_I_CS. IPR004514. Gln-tRNA-synth_Ib. IPR022861. Gln_tRNA_ligase_bac. IPR000924. Glu/Gln-tRNA-synth_Ib. IPR020061. Glu/Gln-tRNA-synth_Ib_a-bdl. IPR020058. Glu/Gln-tRNA-synth_Ib_cat-dom. IPR020059. Glu/Gln-tRNA-synth_Ib_codon-bd. IPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl. IPR011035. Ribosomal_L25/Gln-tRNA_synth. IPR014729. Rossmann-like_a/b/a_fold. [Graphical view]
PANTHER	PTHR10119. PTHR10119. 1 hit.
Pfam	PF00749. tRNA-synt_1c. 1 hit. PF03950. tRNA-synt_1c_C. 1 hit. [Graphical view]
PRINTS	PR00987. TRNASYNTHGLU.
SUPFAM	SSF50715. Ribosomal_L25rel. 1 hit.
TIGRFAMs	TIGR00440. glnS. 1 hit.
PROSITE	PS00178. AA_TRNA_LIGASE_I. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

SYQ_XANOR

Accession

Primary (citable) accession number: Q5GWF4

Entry history

Integrated into UniProtKB/Swiss-Prot:	June 27, 2006
Last sequence update:	March 1, 2005
Last modified:	May 1, 2013
This is version 56 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program