Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Cleavage and polyadenylation specificity factor subunit 4

Gene

Cpsf4

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Component of the cleavage and polyadenylation specificity factor (CPSF) complex that play a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. CPSF4 binds RNA polymers with a preference for poly(U).

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri35 – 61C3H1-type 1PROSITE-ProRule annotationAdd BLAST27
Zinc fingeri62 – 89C3H1-type 2PROSITE-ProRule annotationAdd BLAST28
Zinc fingeri90 – 117C3H1-type 3PROSITE-ProRule annotationAdd BLAST28
Zinc fingeri118 – 142C3H1-type 4PROSITE-ProRule annotationAdd BLAST25
Zinc fingeri143 – 169C3H1-type 5PROSITE-ProRule annotationAdd BLAST27
Zinc fingeri217 – 234CCHC-typePROSITE-ProRule annotationAdd BLAST18

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

mRNA processing

Keywords - Ligandi

Metal-binding, RNA-binding, Zinc

Enzyme and pathway databases

ReactomeiR-RNO-109688. Cleavage of Growing Transcript in the Termination Region.
R-RNO-72163. mRNA Splicing - Major Pathway.
R-RNO-72187. mRNA 3'-end processing.
R-RNO-77595. Processing of Intronless Pre-mRNAs.

Names & Taxonomyi

Protein namesi
Recommended name:
Cleavage and polyadenylation specificity factor subunit 4
Alternative name(s):
Cleavage and polyadenylation specificity factor 30 kDa subunit
Short name:
CPSF 30 kDa subunit
Gene namesi
Name:Cpsf4
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 12

Organism-specific databases

RGDi620440. Cpsf4.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002660211 – 243Cleavage and polyadenylation specificity factor subunit 4Add BLAST243

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei241PhosphoserineBy similarity1

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiQ5FVR7.

PTM databases

PhosphoSitePlusiQ5FVR7.

Expressioni

Gene expression databases

BgeeiENSRNOG00000000985.
ExpressionAtlasiQ5FVR7. differential.
GenevisibleiQ5FVR7. RN.

Interactioni

Subunit structurei

Component of the cleavage and polyadenylation specificity factor (CPSF) complex, composed of CPSF1, CPSF2, CPSF3, CPSF4 and FIP1L1. Interacts with FIP1L1 (By similarity).By similarity

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000046991.

Structurei

3D structure databases

ProteinModelPortaliQ5FVR7.
SMRiQ5FVR7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the CPSF4/YTH1 family.Curated
Contains 5 C3H1-type zinc fingers.PROSITE-ProRule annotation
Contains 1 CCHC-type zinc finger.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri35 – 61C3H1-type 1PROSITE-ProRule annotationAdd BLAST27
Zinc fingeri62 – 89C3H1-type 2PROSITE-ProRule annotationAdd BLAST28
Zinc fingeri90 – 117C3H1-type 3PROSITE-ProRule annotationAdd BLAST28
Zinc fingeri118 – 142C3H1-type 4PROSITE-ProRule annotationAdd BLAST25
Zinc fingeri143 – 169C3H1-type 5PROSITE-ProRule annotationAdd BLAST27
Zinc fingeri217 – 234CCHC-typePROSITE-ProRule annotationAdd BLAST18

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

eggNOGiKOG1040. Eukaryota.
COG5084. LUCA.
GeneTreeiENSGT00390000009627.
HOGENOMiHOG000212457.
HOVERGENiHBG051108.
InParanoidiQ5FVR7.
KOiK14404.
OMAiANKCTKG.
OrthoDBiEOG091G0JUF.
PhylomeDBiQ5FVR7.
TreeFamiTF314871.

Family and domain databases

Gene3Di4.10.1000.10. 2 hits.
4.10.60.10. 1 hit.
InterProiIPR000571. Znf_CCCH.
IPR001878. Znf_CCHC.
[Graphical view]
PfamiPF00642. zf-CCCH. 1 hit.
PF00098. zf-CCHC. 1 hit.
[Graphical view]
SMARTiSM00343. ZnF_C2HC. 1 hit.
SM00356. ZnF_C3H1. 5 hits.
[Graphical view]
SUPFAMiSSF57756. SSF57756. 1 hit.
SSF90229. SSF90229. 2 hits.
PROSITEiPS50103. ZF_C3H1. 5 hits.
PS50158. ZF_CCHC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5FVR7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQEIIASVDH IKFDLEIAVE QQLGAQPLPF PGMDKSGAAV CEFFLKAACG
60 70 80 90 100
KGGMCPFRHI SGEKTVVCKH WLRGLCKKGD QCEFLHEYDM TKMPECYFYS
110 120 130 140 150
KFGECSNKEC PFLHIDPESK IKDCPWYDRG FCKHGPLCRH RHTRRVICVN
160 170 180 190 200
YLVGFCPEGP SCKFMHPRFE LPMGTTEQPP LPQQTQPPTK RAPQVIGVMQ
210 220 230 240
SQNSSAGNRG PRPLEQVTCY KCGEKGHYAN RCTKGHLAFL SGQ
Length:243
Mass (Da):27,419
Last modified:March 1, 2005 - v1
Checksum:i3520EB40BD525C8F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC089824 mRNA. Translation: AAH89824.1.
RefSeqiNP_001012351.1. NM_001012351.2.
UniGeneiRn.104788.

Genome annotation databases

EnsembliENSRNOT00000042474; ENSRNOP00000046991; ENSRNOG00000000985.
GeneIDi304277.
KEGGirno:304277.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC089824 mRNA. Translation: AAH89824.1.
RefSeqiNP_001012351.1. NM_001012351.2.
UniGeneiRn.104788.

3D structure databases

ProteinModelPortaliQ5FVR7.
SMRiQ5FVR7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000046991.

PTM databases

PhosphoSitePlusiQ5FVR7.

Proteomic databases

PaxDbiQ5FVR7.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000042474; ENSRNOP00000046991; ENSRNOG00000000985.
GeneIDi304277.
KEGGirno:304277.

Organism-specific databases

CTDi10898.
RGDi620440. Cpsf4.

Phylogenomic databases

eggNOGiKOG1040. Eukaryota.
COG5084. LUCA.
GeneTreeiENSGT00390000009627.
HOGENOMiHOG000212457.
HOVERGENiHBG051108.
InParanoidiQ5FVR7.
KOiK14404.
OMAiANKCTKG.
OrthoDBiEOG091G0JUF.
PhylomeDBiQ5FVR7.
TreeFamiTF314871.

Enzyme and pathway databases

ReactomeiR-RNO-109688. Cleavage of Growing Transcript in the Termination Region.
R-RNO-72163. mRNA Splicing - Major Pathway.
R-RNO-72187. mRNA 3'-end processing.
R-RNO-77595. Processing of Intronless Pre-mRNAs.

Miscellaneous databases

PROiQ5FVR7.

Gene expression databases

BgeeiENSRNOG00000000985.
ExpressionAtlasiQ5FVR7. differential.
GenevisibleiQ5FVR7. RN.

Family and domain databases

Gene3Di4.10.1000.10. 2 hits.
4.10.60.10. 1 hit.
InterProiIPR000571. Znf_CCCH.
IPR001878. Znf_CCHC.
[Graphical view]
PfamiPF00642. zf-CCCH. 1 hit.
PF00098. zf-CCHC. 1 hit.
[Graphical view]
SMARTiSM00343. ZnF_C2HC. 1 hit.
SM00356. ZnF_C3H1. 5 hits.
[Graphical view]
SUPFAMiSSF57756. SSF57756. 1 hit.
SSF90229. SSF90229. 2 hits.
PROSITEiPS50103. ZF_C3H1. 5 hits.
PS50158. ZF_CCHC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiCPSF4_RAT
AccessioniPrimary (citable) accession number: Q5FVR7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 12, 2006
Last sequence update: March 1, 2005
Last modified: November 30, 2016
This is version 86 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.