Q5FVH0 (C1QT5_RAT) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Complement C1q tumor necrosis factor-related protein 5

Gene names

Name:	C1qtnf5
Synonyms:	Ctrp5

Organism

Rattus norvegicus (Rat)

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	243 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is further processed into a mature form.
Protein existence	Evidence at transcript level

General annotation (Comments)

Subcellular location	Secreted Probable.
Sequence similarities	Contains 1 C1q domain. Contains 1 collagen-like domain.

Ontologies

Keywords
Cellular component	Secreted
Domain	Collagen Signal
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Cellular component	collagen Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Signal peptide	1 – 15	15	By similarity
	Chain	16 – 243	228	Complement C1q tumor necrosis factor-related protein 5		PRO_0000003537
Regions
	Domain	30 – 95	66	Collagen-like
	Domain	99 – 243	145	C1q

Sequences

	Sequence		Length	Mass (Da)
	Q5FVH0 [UniParc]. Last modified March 1, 2005. Version 1. Checksum: 178AB5F39D52B041	FASTA	243	25,334
	10 20 30 40 50 60 MRPLLALLLL GLASGSPPLD DNKIPSLCPG QPGLPGTPGH HGSQGLPGRD GRDGRDGAPG 70 80 90 100 110 120 APGEKGEGGR PGLPGPRGEP GPRGEAGPVG AIGPAGECSV PPRSAFSAKR SESRVPPPAD 130 140 150 160 170 180 TPLPFDRVLL NEQGHYDATT GKFTCQVPGV YYFAVHATVY RASLQFDLVK NGQSIASFFQ 190 200 210 220 230 240 FFGGWPKPAS LSGGAMVRLE PEDQVWVQVG VGDYIGIYAS IKTDSTFSGF LVYSDWHSSP VFA

References

[1]	"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Brain.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BC089992 mRNA. Translation: AAH89992.1.
IPI	IPI00192442.
RefSeq	NP_001012123.1. NM_001012123.1.
UniGene	Rn.99884.
3D structure databases
ProteinModelPortal	Q5FVH0.
ModBase	Search...
Protein-protein interaction databases
IntAct	Q5FVH0. 1 interaction.
MINT	MINT-1794064.
STRING	Q5FVH0.
Proteomic databases
PRIDE	Q5FVH0.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSRNOT00000010127; ENSRNOP00000010127; ENSRNOG00000007613.
GeneID	315598.
KEGG	rno:315598.
NMPDR	fig|10116.3.peg.28433.
UCSC	NM_001012123. rat.
Organism-specific databases
CTD	114902.
RGD	1308802. C1qtnf5.
Phylogenomic databases
eggNOG	maNOG22069.
GeneTree	ENSGT00560000076704.
HOVERGEN	HBG108220.
InParanoid	Q5FVH0.
OMA	LYYFAVH.
OrthoDB	EOG4W6NX2.
PhylomeDB	Q5FVH0.
Gene expression databases
ArrayExpress	Q5FVH0.
Genevestigator	Q5FVH0.
GermOnline	ENSRNOG00000007613. Rattus norvegicus.
Family and domain databases
InterPro	IPR001073. C1q. IPR008160. Collagen. IPR008983. Tumour_necrosis_fac-like. [Graphical view]
Gene3D	G3DSA:2.60.120.40. Tumour_necrosis_fac-like. 1 hit.
Pfam	PF00386. C1q. 1 hit. PF01391. Collagen. 2 hits. [Graphical view]
PRINTS	PR00007. COMPLEMNTC1Q.
SMART	SM00110. C1Q. 1 hit. [Graphical view]
SUPFAM	SSF49842. TNF_like. 1 hit.
PROSITE	PS50871. C1Q. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	669478.

Entry information

Entry name

C1QT5_RAT

Accession

Primary (citable) accession number: Q5FVH0

Entry history

Integrated into UniProtKB/Swiss-Prot:	April 26, 2005
Last sequence update:	March 1, 2005
Last modified:	September 21, 2011
This is version 56 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Chordata Protein Annotation Program