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Protein

50S ribosomal protein L16

Gene

rplP

Organism
Ehrlichia ruminantium (strain Gardel)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs.UniRule annotation

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro
  3. tRNA binding Source: UniProtKB-KW

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding, tRNA-binding

Enzyme and pathway databases

BioCyciERUM302409:GHVW-652-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L16UniRule annotation
Gene namesi
Name:rplPUniRule annotation
Ordered Locus Names:ERGA_CDS_06220
OrganismiEhrlichia ruminantium (strain Gardel)
Taxonomic identifieri302409 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRickettsialesAnaplasmataceaeEhrlichia
ProteomesiUP000000533: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 13613650S ribosomal protein L16PRO_0000062097Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi302409.ERGA_CDS_06220.

Structurei

3D structure databases

ProteinModelPortaliQ5FFU7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L16P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0197.
HOGENOMiHOG000164573.
KOiK02878.
OMAiPVKTKFI.
OrthoDBiEOG6WHNWS.

Family and domain databases

Gene3Di3.90.1170.10. 1 hit.
HAMAPiMF_01342. Ribosomal_L16.
InterProiIPR016180. Ribosomal_L10e/L16.
IPR000114. Ribosomal_L16.
IPR020798. Ribosomal_L16_CS.
[Graphical view]
PANTHERiPTHR12220. PTHR12220. 1 hit.
PfamiPF00252. Ribosomal_L16. 1 hit.
[Graphical view]
PRINTSiPR00060. RIBOSOMALL16.
SUPFAMiSSF54686. SSF54686. 1 hit.
TIGRFAMsiTIGR01164. rplP_bact. 1 hit.
PROSITEiPS00701. RIBOSOMAL_L16_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5FFU7-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MFIPKKTKYK KDFKGRISGN AKGGYTLAFG TYGLKSLEPG RLTSKQVESA
60 70 80 90 100
RRSISRTLKR VGKVWIRVFC HTPVSKKPMD VRMGKGKGSI EMWVCKVKPG
110 120 130
KILFEISGVS LNLAKEALQK SQAKLPVKCK FISDEL
Length:136
Mass (Da):15,208
Last modified:March 1, 2005 - v1
Checksum:i1EAE7A3764EBD66A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR925677 Genomic DNA. Translation: CAI28074.1.
RefSeqiWP_011155282.1. NC_006831.1.
YP_196548.1. NC_006831.1.

Genome annotation databases

EnsemblBacteriaiCAI28074; CAI28074; ERGA_CDS_06220.
GeneIDi3268131.
KEGGierg:ERGA_CDS_06220.
PATRICi20579010. VBIEhrRum72196_0657.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR925677 Genomic DNA. Translation: CAI28074.1.
RefSeqiWP_011155282.1. NC_006831.1.
YP_196548.1. NC_006831.1.

3D structure databases

ProteinModelPortaliQ5FFU7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi302409.ERGA_CDS_06220.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAI28074; CAI28074; ERGA_CDS_06220.
GeneIDi3268131.
KEGGierg:ERGA_CDS_06220.
PATRICi20579010. VBIEhrRum72196_0657.

Phylogenomic databases

eggNOGiCOG0197.
HOGENOMiHOG000164573.
KOiK02878.
OMAiPVKTKFI.
OrthoDBiEOG6WHNWS.

Enzyme and pathway databases

BioCyciERUM302409:GHVW-652-MONOMER.

Family and domain databases

Gene3Di3.90.1170.10. 1 hit.
HAMAPiMF_01342. Ribosomal_L16.
InterProiIPR016180. Ribosomal_L10e/L16.
IPR000114. Ribosomal_L16.
IPR020798. Ribosomal_L16_CS.
[Graphical view]
PANTHERiPTHR12220. PTHR12220. 1 hit.
PfamiPF00252. Ribosomal_L16. 1 hit.
[Graphical view]
PRINTSiPR00060. RIBOSOMALL16.
SUPFAMiSSF54686. SSF54686. 1 hit.
TIGRFAMsiTIGR01164. rplP_bact. 1 hit.
PROSITEiPS00701. RIBOSOMAL_L16_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Comparative genomic analysis of three strains of Ehrlichia ruminantium reveals an active process of genome size plasticity."
    Frutos R., Viari A., Ferraz C., Morgat A., Eychenie S., Kandassamy Y., Chantal I., Bensaid A., Coissac E., Vachiery N., Demaille J., Martinez D.
    J. Bacteriol. 188:2533-2542(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Gardel.

Entry informationi

Entry nameiRL16_EHRRG
AccessioniPrimary (citable) accession number: Q5FFU7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 10, 2006
Last sequence update: March 1, 2005
Last modified: January 7, 2015
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.