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Protein
Submitted name:

Capsid protein

Gene
N/A
Organism
Norwalk virus
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei299GalactoseCombined sources1
Binding sitei381FucoseCombined sources1
Binding sitei382N-acetyl-D-glucosamineCombined sources1
Binding sitei385FucoseCombined sources1
Binding sitei449N-acetyl-D-glucosamine; via carbonyl oxygenCombined sources1

Names & Taxonomyi

Protein namesi
Submitted name:
Capsid proteinImported
OrganismiNorwalk virusImported
Taxonomic identifieri11983 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA positive-strand viruses, no DNA stageCaliciviridaeNorovirus

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3ONUX-ray1.40A/B225-538[»]
3ONYX-ray1.85A/B/C225-538[»]
3PA1X-ray1.48A/B224-538[»]
3PA2X-ray1.48A/B224-538[»]
3Q38X-ray1.28A/B224-538[»]
3Q39X-ray1.25A/B224-538[»]
3Q3AX-ray1.40A/B224-538[»]
3Q6QX-ray1.43A/B224-538[»]
3Q6RX-ray1.40A/B224-538[»]
3RY8X-ray1.40A/B225-538[»]
3V7AX-ray3.30A/B224-538[»]
4X7EX-ray2.11A/B224-538[»]
4X7FX-ray1.70A/B224-538[»]
4Z4RX-ray1.80A/B224-538[»]
4Z4SX-ray1.80A/B224-538[»]
4Z4TX-ray1.80A/B224-538[»]
4Z4UX-ray1.89A/B224-538[»]
4Z4VX-ray1.80A/B224-538[»]
4Z4WX-ray1.80A/B224-538[»]
4Z4YX-ray1.80A/B224-538[»]
4Z4ZX-ray1.80A/B224-538[»]
5BSXX-ray1.78A/B224-538[»]
5BSYX-ray1.60A/B224-538[»]
ProteinModelPortaliQ5F4T5.
SMRiQ5F4T5.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5F4T5.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini12 – 275Calici_coatInterPro annotationAdd BLAST264
Domaini307 – 546Calici_coat_CInterPro annotationAdd BLAST240

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni355 – 356Fucose bindingCombined sources2
Regioni400 – 401N-acetyl-D-glucosamine bindingCombined sources2
Regioni451 – 452Fucose bindingCombined sources2

Family and domain databases

CDDicd00205. rhv_like. 1 hit.
Gene3Di2.60.120.20. 1 hit.
InterProiIPR004005. Calicivirus_coat.
IPR013643. Calicivirus_coat_C.
IPR033703. Rhv-like.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF00915. Calici_coat. 1 hit.
PF08435. Calici_coat_C. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5F4T5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKMASNDAAP SNDGAAGLVP ESNNEVMALE PVAGASLAAP VTGQTNIIDP
60 70 80 90 100
WIRMNFVQAP NGEFTVSPRN SPGEVLLNLE LGPELNPYLA HLSRMYNGYA
110 120 130 140 150
GGMEVQIMLA GNAFTAGKLI FAAVPPHFPI ENLSPPQITM FPHVIIDVRT
160 170 180 190 200
LEPVLLPMPD IRNSFFHFIQ RDEPKMRLVA MLYTPLRSNG SGDDVFTVSC
210 220 230 240 250
RVLTRPTPDF DFTYLVPPTV ESKSKPFTLP ILTLGELTNS RFPLPIDVLY
260 270 280 290 300
TNPNESAIVQ CQNGRCTLDG ELQGTTQLLP TGICAFRGKV TQQVQDEHRG
310 320 330 340 350
THWNMTVTNL NGTPFDPTED VPAPLGTPDF SGQIYGVISQ RNTNTVPGEG
360 370 380 390 400
NLPANRAHEA VIATYSPKFT PKLGNIQFST WETQDVSSGQ PTKFTPVGLA
410 420 430 440 450
SVDANSHFDQ WTLPSYSGAL TLNMNLAPSV APVFPGECLL FFRSFIPLKG
460 470 480 490 500
GYGNPAIDCL MPQEWVQHLY QESAPSLSDV ALVRYVNPET GRTLFEAKLH
510 520 530 540
RNGFLTVARN SAGPVVAPTN GYFRFDSWVN QFYTLAPMGN GSGRRRMQ
Length:548
Mass (Da):59,900
Last modified:March 15, 2005 - v1
Checksum:iFDB134B87D09A39B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF504671 Genomic RNA. Translation: AAT12445.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF504671 Genomic RNA. Translation: AAT12445.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3ONUX-ray1.40A/B225-538[»]
3ONYX-ray1.85A/B/C225-538[»]
3PA1X-ray1.48A/B224-538[»]
3PA2X-ray1.48A/B224-538[»]
3Q38X-ray1.28A/B224-538[»]
3Q39X-ray1.25A/B224-538[»]
3Q3AX-ray1.40A/B224-538[»]
3Q6QX-ray1.43A/B224-538[»]
3Q6RX-ray1.40A/B224-538[»]
3RY8X-ray1.40A/B225-538[»]
3V7AX-ray3.30A/B224-538[»]
4X7EX-ray2.11A/B224-538[»]
4X7FX-ray1.70A/B224-538[»]
4Z4RX-ray1.80A/B224-538[»]
4Z4SX-ray1.80A/B224-538[»]
4Z4TX-ray1.80A/B224-538[»]
4Z4UX-ray1.89A/B224-538[»]
4Z4VX-ray1.80A/B224-538[»]
4Z4WX-ray1.80A/B224-538[»]
4Z4YX-ray1.80A/B224-538[»]
4Z4ZX-ray1.80A/B224-538[»]
5BSXX-ray1.78A/B224-538[»]
5BSYX-ray1.60A/B224-538[»]
ProteinModelPortaliQ5F4T5.
SMRiQ5F4T5.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Miscellaneous databases

EvolutionaryTraceiQ5F4T5.

Family and domain databases

CDDicd00205. rhv_like. 1 hit.
Gene3Di2.60.120.20. 1 hit.
InterProiIPR004005. Calicivirus_coat.
IPR013643. Calicivirus_coat_C.
IPR033703. Rhv-like.
IPR029053. Viral_coat.
[Graphical view]
PfamiPF00915. Calici_coat. 1 hit.
PF08435. Calici_coat_C. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ5F4T5_9CALI
AccessioniPrimary (citable) accession number: Q5F4T5
Entry historyi
Integrated into UniProtKB/TrEMBL: March 15, 2005
Last sequence update: March 15, 2005
Last modified: November 30, 2016
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.