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Protein
Submitted name:

Uncharacterized protein

Gene

NUP50

Organism
Gallus gallus (Chicken)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Enzyme and pathway databases

ReactomeiR-GGA-159236. Transport of Mature mRNA derived from an Intron-Containing Transcript.
R-GGA-191859. snRNP Assembly.
R-GGA-3108214. SUMOylation of DNA damage response and repair proteins.
R-GGA-3301854. Nuclear Pore Complex (NPC) Disassembly.
R-GGA-4551638. SUMOylation of chromatin organization proteins.
R-GGA-4615885. SUMOylation of DNA replication proteins.
R-GGA-5578749. Transcriptional regulation by small RNAs.

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:NUP50Imported
ORF Names:RCJMB04_2i13Imported
OrganismiGallus gallus (Chicken)Imported
Taxonomic identifieri9031 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesNeognathaeGalloanseraeGalliformesPhasianidaePhasianinaeGallus
Proteomesi
  • UP000000539 Componenti: Chromosome 1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PaxDbiQ5F473.

Expressioni

Gene expression databases

BgeeiENSGALG00000014222.

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi9031.ENSGALP00000022956.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini335 – 468RanBD1InterPro annotationAdd BLAST134

Phylogenomic databases

eggNOGiKOG2724. Eukaryota.
ENOG410YPHB. LUCA.
GeneTreeiENSGT00440000035348.
HOGENOMiHOG000007919.
HOVERGENiHBG052697.
OMAiTFLFHGN.
OrthoDBiEOG091G0HML.
TreeFamiTF106504.

Family and domain databases

Gene3Di2.30.29.30. 1 hit.
InterProiView protein in InterPro
IPR015007. NUP2/50/61.
IPR011993. PH-like_dom_sf.
IPR000156. Ran_bind_dom.
PfamiView protein in Pfam
PF08911. NUP50. 1 hit.
PF00638. Ran_BP1. 1 hit.
SMARTiView protein in SMART
SM00160. RanBD. 1 hit.
SUPFAMiSSF50729. SSF50729. 1 hit.
PROSITEiView protein in PROSITE
PS50196. RANBD1. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5F473-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKRIAEKEL TDRNWDQEDE AEEVGTFSVA SEEVLKNRAI KKAKRQNVAS
60 70 80 90 100
EPESRGAFKG FKGFVLPSGK EGGGFSGFGN GAGIKPLEGL SNGNSSIFST
110 120 130 140 150
PFSGLKTTSE TKSAFGSPMS NGPTTTTFTE KAAASPKANG GSQPSSSGYT
160 170 180 190 200
QSKVCSSSVY HKQLAALNCS VRDWIVKHVN TNPLCDLTPI FRDYEKYLAT
210 220 230 240 250
IEQQHGNSSD SGSENESNKT PGTQSASTFG NSKLQQGSTF LFNNKTEDAS
260 270 280 290 300
DKKTEAASEK RDPSIGATST VSFNIGKSGH SSGLSSFGSG TRSSFSFSPG
310 320 330 340 350
NPGLFGKDAN QAKSATAVST NALEAQTESG NNDDKGGEEE EEEPPKVIVN
360 370 380 390 400
EIKEDDAFYS KKCKLFYKKD NEFKEKGVGT LHLKPAGNEK TQLLVRADTN
410 420 430 440 450
LGNILLNVLI PPKMPCTRTG KNNVLIVCVP NPPIDENNPT VPVTMLIRVK
460
TSEDADELHK ILLEKKEA
Length:468
Mass (Da):50,108
Last modified:March 15, 2005 - v1
Checksum:iA0744E801A9D5B3F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AADN04000045 Genomic DNA. No translation available.
AJ851427 mRNA. Translation: CAH65061.1.
RefSeqiNP_001012559.1. NM_001012541.1.
UniGeneiGga.16654.

Genome annotation databases

EnsembliENSGALT00000022998; ENSGALP00000022956; ENSGALG00000014222.
GeneIDi418240.

Similar proteinsi

Entry informationi

Entry nameiQ5F473_CHICK
AccessioniPrimary (citable) accession number: Q5F473
Entry historyiIntegrated into UniProtKB/TrEMBL: March 15, 2005
Last sequence update: March 15, 2005
Last modified: January 31, 2018
This is version 97 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported