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Protein
Submitted name:

Heterogeneous nuclear ribonucleoprotein A1

Gene

Hnrnpa1

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

RibonucleoproteinImported

Keywords - Ligandi

Viral nucleoproteinImported

Names & Taxonomyi

Protein namesi
Submitted name:
Heterogeneous nuclear ribonucleoprotein A1Imported
Gene namesi
Name:Hnrnpa1Imported
Synonyms:Hnrpa1Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 15

Organism-specific databases

MGIiMGI:104820. Hnrnpa1.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Virion

PTM / Processingi

Proteomic databases

TopDownProteomicsiQ5EBP8.

Expressioni

Gene expression databases

BgeeiENSMUSG00000046434.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000042658.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini14 – 97RRM (RNA recognition motif)InterPro annotationAdd BLAST84
Domaini105 – 184RRM (RNA recognition motif)InterPro annotationAdd BLAST80

Phylogenomic databases

eggNOGiKOG0118. Eukaryota.
COG0724. LUCA.
GeneTreeiENSGT00760000118873.
HOVERGENiHBG002295.
OMAiEVEIMTD.
OrthoDBiEOG091G1CPI.
TreeFamiTF314808.

Family and domain databases

Gene3Di3.30.70.330. 2 hits.
InterProiIPR021662. HnRNPA1.
IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF11627. HnRNPA1. 1 hit.
PF00076. RRM_1. 2 hits.
[Graphical view]
SMARTiSM00360. RRM. 2 hits.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 2 hits.
PROSITEiPS50102. RRM. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5EBP8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSKSESPKEP EQLRKLFIGG LSFETTDESL RSHFEQWGTL TDCVVMRDPN
60 70 80 90 100
TKRSRGFGFV TYATVEEVDA AMNARPHKVD GRVVEPKRAV SREDSQRPGA
110 120 130 140 150
HLTVKKIFVG GIKEDTEEHH LRDYFEQYGK IEVIEIMTDR GSGKKRGFAF
160 170 180 190 200
VTFDDHDSVD KIVIQKYHTV NGHNCEVRKA LSKQEMASAS SSQRGRSGSG
210 220 230 240 250
NFGGGRGGGF GGNDNFGRGG NFSGRGGFGG SRGGGGYGGS GDGYNGFGND
260 270 280 290 300
GGYGGGSPGY SGGSRGYGSG GQGYGNQGSG YGGSGSYDSY NNGGGGGGFG
310 320 330 340 350
GGSGSNFGGG GSYNDFGNYN NQSSNFGPMK GGNFGGRSSG PYGGGGQYFA
360 370
KPRNQGGYGG SSSSSSYGSG RRF
Length:373
Mass (Da):38,834
Last modified:March 15, 2005 - v1
Checksum:i7FF82F613E0595BC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC164069 Genomic DNA. No translation available.
BC089340 mRNA. Translation: AAH89340.1.
BC092395 mRNA. Translation: AAH92395.1.
AK146630 mRNA. Translation: BAE27318.1.
AK166989 mRNA. Translation: BAE39169.1.
AK168733 mRNA. Translation: BAE40574.1.
RefSeqiNP_001034218.1. NM_001039129.4.
UniGeneiMm.237064.
Mm.432031.

Genome annotation databases

EnsembliENSMUST00000036004; ENSMUSP00000042658; ENSMUSG00000046434.
GeneIDi15382.
UCSCiuc007xxr.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC164069 Genomic DNA. No translation available.
BC089340 mRNA. Translation: AAH89340.1.
BC092395 mRNA. Translation: AAH92395.1.
AK146630 mRNA. Translation: BAE27318.1.
AK166989 mRNA. Translation: BAE39169.1.
AK168733 mRNA. Translation: BAE40574.1.
RefSeqiNP_001034218.1. NM_001039129.4.
UniGeneiMm.237064.
Mm.432031.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000042658.

Proteomic databases

TopDownProteomicsiQ5EBP8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000036004; ENSMUSP00000042658; ENSMUSG00000046434.
GeneIDi15382.
UCSCiuc007xxr.2. mouse.

Organism-specific databases

CTDi3178.
MGIiMGI:104820. Hnrnpa1.

Phylogenomic databases

eggNOGiKOG0118. Eukaryota.
COG0724. LUCA.
GeneTreeiENSGT00760000118873.
HOVERGENiHBG002295.
OMAiEVEIMTD.
OrthoDBiEOG091G1CPI.
TreeFamiTF314808.

Miscellaneous databases

ChiTaRSiHnrnpa1. mouse.
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000046434.

Family and domain databases

Gene3Di3.30.70.330. 2 hits.
InterProiIPR021662. HnRNPA1.
IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF11627. HnRNPA1. 1 hit.
PF00076. RRM_1. 2 hits.
[Graphical view]
SMARTiSM00360. RRM. 2 hits.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 2 hits.
PROSITEiPS50102. RRM. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ5EBP8_MOUSE
AccessioniPrimary (citable) accession number: Q5EBP8
Entry historyi
Integrated into UniProtKB/TrEMBL: March 15, 2005
Last sequence update: March 15, 2005
Last modified: November 30, 2016
This is version 109 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.