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Protein
Submitted name:

Nipsnap1 protein

Gene

Nipsnap1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Nipsnap1 proteinImported
Gene namesi
Name:Nipsnap1Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi1310419. Nipsnap1.

PTM / Processingi

Proteomic databases

PaxDbiQ5EBA4.
PRIDEiQ5EBA4.

PTM databases

iPTMnetiQ5EBA4.
PhosphoSiteiQ5EBA4.

Expressioni

Gene expression databases

GenevisibleiQ5EBA4. RN.

Interactioni

Protein-protein interaction databases

IntActiQ5EBA4. 1 interaction.
STRINGi10116.ENSRNOP00000011158.

Structurei

3D structure databases

ProteinModelPortaliQ5EBA4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini184 – 28198NIPSNAPInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG2883. Eukaryota.
ENOG410XSWP. LUCA.
HOGENOMiHOG000194298.
HOVERGENiHBG052627.
OMAiAFSYWPQ.
PhylomeDBiQ5EBA4.

Family and domain databases

InterProiIPR011008. Dimeric_a/b-barrel.
IPR012577. NIPSNAP.
[Graphical view]
PfamiPF07978. NIPSNAP. 1 hit.
[Graphical view]
SUPFAMiSSF54909. SSF54909. 2 hits.

Sequencei

Sequence statusi: Fragment.

Q5EBA4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
APRLCIISAA ARRLLRKPGP CVGDLAAARA VRFYSKDSEG SWFRSLFVHK
60 70 80 90 100
VDPRKDAHST LLSKKETSNL YKIQFHNVKP ECLDAYNSLT EAVLPKLHLD
110 120 130 140 150
EDYPCSLVGN WNTWYGEQDQ AVHLWRFSGG YPALMDCMNK LKTNKEYLEF
160 170 180 190 200
RKERSKMLLS RRNQLLLEFS FWNEPQPRAG PNIYELRTYK LKPGTMIEWG
210 220 230 240 250
NNWARAIKYR QENQEAVGGF FSQIGELYVV HHLWAYKDLQ SREETRNAAW
260 270 280
RKRGWDENVY YTVPLVRHME SRIMIPLKIS PLQ
Length:283
Mass (Da):33,215
Last modified:March 15, 2005 - v1
Checksum:iA68A57F95561A8A1
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC089879 mRNA. Translation: AAH89879.1.
RefSeqiNP_001094200.1. NM_001100730.1.
UniGeneiRn.103205.

Genome annotation databases

GeneIDi360971.
KEGGirno:360971.
UCSCiRGD:1310419. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC089879 mRNA. Translation: AAH89879.1.
RefSeqiNP_001094200.1. NM_001100730.1.
UniGeneiRn.103205.

3D structure databases

ProteinModelPortaliQ5EBA4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ5EBA4. 1 interaction.
STRINGi10116.ENSRNOP00000011158.

PTM databases

iPTMnetiQ5EBA4.
PhosphoSiteiQ5EBA4.

Proteomic databases

PaxDbiQ5EBA4.
PRIDEiQ5EBA4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi360971.
KEGGirno:360971.
UCSCiRGD:1310419. rat.

Organism-specific databases

CTDi8508.
RGDi1310419. Nipsnap1.

Phylogenomic databases

eggNOGiKOG2883. Eukaryota.
ENOG410XSWP. LUCA.
HOGENOMiHOG000194298.
HOVERGENiHBG052627.
OMAiAFSYWPQ.
PhylomeDBiQ5EBA4.

Gene expression databases

GenevisibleiQ5EBA4. RN.

Family and domain databases

InterProiIPR011008. Dimeric_a/b-barrel.
IPR012577. NIPSNAP.
[Graphical view]
PfamiPF07978. NIPSNAP. 1 hit.
[Graphical view]
SUPFAMiSSF54909. SSF54909. 2 hits.
ProtoNetiSearch...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: LiverImported.

Entry informationi

Entry nameiQ5EBA4_RAT
AccessioniPrimary (citable) accession number: Q5EBA4
Entry historyi
Integrated into UniProtKB/TrEMBL: March 15, 2005
Last sequence update: March 15, 2005
Last modified: June 8, 2016
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.