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Protein
Submitted name:

Exosc7 protein

Gene

Exosc7

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Exosc7 proteinImported
Gene namesi
Name:Exosc7Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi1309758. Exosc7.

PTM / Processingi

Proteomic databases

PaxDbiQ5EB65.
PRIDEiQ5EB65.

Expressioni

Gene expression databases

GenevisibleiQ5EB65. RN.

Interactioni

Protein-protein interaction databases

IntActiQ5EB65. 1 interaction.
STRINGi10116.ENSRNOP00000005975.

Structurei

3D structure databases

ProteinModelPortaliQ5EB65.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1 – 132132RNase_PHInterPro annotationAdd
BLAST
Domaini163 – 22664RNase_PH_CInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG1612. Eukaryota.
COG2123. LUCA.
HOGENOMiHOG000229504.
HOVERGENiHBG051521.
KOiK12589.
PhylomeDBiQ5EB65.

Family and domain databases

InterProiIPR001247. ExoRNase_PH_dom1.
IPR015847. ExoRNase_PH_dom2.
IPR020568. Ribosomal_S5_D2-typ_fold.
[Graphical view]
PfamiPF01138. RNase_PH. 1 hit.
PF03725. RNase_PH_C. 1 hit.
[Graphical view]
SUPFAMiSSF54211. SSF54211. 2 hits.
SSF55666. SSF55666. 1 hit.

Sequencei

Sequence statusi: Fragment.

Q5EB65-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
VEVETDVVSN TSGSARVKLG HTDILVGVKA EMGTPKLERP SEGYLEFFVD
60 70 80 90 100
CSANATPEFE GRGGDDLGTE IANTLYRIFN NKSSVDLRSL CISPREHCWV
110 120 130 140 150
LYVDVLLLEC GGNLFDAISI AVKAALFNTR IPRVRVLEDE EGSKDIELSD
160 170 180 190 200
DPYDCIRLSV ENVPCIVTLC KIGCRHVVDA TLQEEACSLA SLLVSVTSKG
210 220 230 240 250
VVTCMRKVGK GSLDPESIFE MMESSKRVGK VLHMSLQSLL HKEESLGPKR

PKVGFLG
Length:257
Mass (Da):28,065
Last modified:March 15, 2005 - v1
Checksum:i76E8DFEA9186133B
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC089995 mRNA. Translation: AAH89995.1.
RefSeqiNP_001094195.1. NM_001100725.1.
UniGeneiRn.45886.

Genome annotation databases

GeneIDi316098.
KEGGirno:316098.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC089995 mRNA. Translation: AAH89995.1.
RefSeqiNP_001094195.1. NM_001100725.1.
UniGeneiRn.45886.

3D structure databases

ProteinModelPortaliQ5EB65.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ5EB65. 1 interaction.
STRINGi10116.ENSRNOP00000005975.

Proteomic databases

PaxDbiQ5EB65.
PRIDEiQ5EB65.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi316098.
KEGGirno:316098.

Organism-specific databases

CTDi23016.
RGDi1309758. Exosc7.

Phylogenomic databases

eggNOGiKOG1612. Eukaryota.
COG2123. LUCA.
HOGENOMiHOG000229504.
HOVERGENiHBG051521.
KOiK12589.
PhylomeDBiQ5EB65.

Miscellaneous databases

NextBioi670427.

Gene expression databases

GenevisibleiQ5EB65. RN.

Family and domain databases

InterProiIPR001247. ExoRNase_PH_dom1.
IPR015847. ExoRNase_PH_dom2.
IPR020568. Ribosomal_S5_D2-typ_fold.
[Graphical view]
PfamiPF01138. RNase_PH. 1 hit.
PF03725. RNase_PH_C. 1 hit.
[Graphical view]
SUPFAMiSSF54211. SSF54211. 2 hits.
SSF55666. SSF55666. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: BrainImported.

Entry informationi

Entry nameiQ5EB65_RAT
AccessioniPrimary (citable) accession number: Q5EB65
Entry historyi
Integrated into UniProtKB/TrEMBL: March 15, 2005
Last sequence update: March 15, 2005
Last modified: May 11, 2016
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.