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Protein

Deoxyribose-phosphate aldolase

Gene

deoC

Organism
Vibrio fischeri (strain ATCC 700601 / ES114)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5-phosphate.UniRule annotation

Catalytic activityi

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde.UniRule annotation

Pathwayi: 2-deoxy-D-ribose 1-phosphate degradation

This protein is involved in step 2 of the subpathway that synthesizes D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-alpha-D-ribose 1-phosphate.UniRule annotation
Proteins known to be involved in the 2 steps of the subpathway in this organism are:
  1. no protein annotated in this organism
  2. Deoxyribose-phosphate aldolase (deoC)
This subpathway is part of the pathway 2-deoxy-D-ribose 1-phosphate degradation, which is itself part of Carbohydrate degradation.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-alpha-D-ribose 1-phosphate, the pathway 2-deoxy-D-ribose 1-phosphate degradation and in Carbohydrate degradation.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei102Proton donor/acceptorUniRule annotation1
Active sitei165Schiff-base intermediate with acetaldehydeUniRule annotation1
Active sitei199Proton donor/acceptorUniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLyase
LigandSchiff base

Enzyme and pathway databases

BioCyciVFIS312309:G1G40-520-MONOMER
UniPathwayiUPA00002; UER00468

Names & Taxonomyi

Protein namesi
Recommended name:
Deoxyribose-phosphate aldolaseUniRule annotation (EC:4.1.2.4UniRule annotation)
Short name:
DERAUniRule annotation
Alternative name(s):
2-deoxy-D-ribose 5-phosphate aldolaseUniRule annotation
PhosphodeoxyriboaldolaseUniRule annotation
Short name:
DeoxyriboaldolaseUniRule annotation
Gene namesi
Name:deoCUniRule annotation
Ordered Locus Names:VF_0504
OrganismiVibrio fischeri (strain ATCC 700601 / ES114)
Taxonomic identifieri312309 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio
Proteomesi
  • UP000000537 Componenti: Chromosome I

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10000726171 – 258Deoxyribose-phosphate aldolaseAdd BLAST258

Interactioni

Protein-protein interaction databases

STRINGi312309.VF_0504

Structurei

3D structure databases

ProteinModelPortaliQ5E7J7
SMRiQ5E7J7
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the DeoC/FbaB aldolase family. DeoC type 2 subfamily.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105FCI Bacteria
COG0274 LUCA
HOGENOMiHOG000241644
KOiK01619
OMAiMNACIPP
OrthoDBiPOG091H00TV

Family and domain databases

CDDicd00959 DeoC, 1 hit
Gene3Di3.20.20.70, 1 hit
HAMAPiMF_00592 DeoC_type2, 1 hit
InterProiView protein in InterPro
IPR013785 Aldolase_TIM
IPR011343 DeoC
IPR002915 DeoC/FbaB/lacD_aldolase
IPR023649 DeoC_typeII
PANTHERiPTHR10889 PTHR10889, 1 hit
PfamiView protein in Pfam
PF01791 DeoC, 1 hit
PIRSFiPIRSF001357 DeoC, 1 hit
SMARTiView protein in SMART
SM01133 DeoC, 1 hit
TIGRFAMsiTIGR00126 deoC, 1 hit

Sequencei

Sequence statusi: Complete.

Q5E7J7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSDLKAAALR ALKLMDLTTL NDNDTDEAVI ALCKNAKTAV GNTAAVCIYP
60 70 80 90 100
RFIPIAKKTL REQGTPEVRI ATVTNFPHGN DDIEIAVAET KAAVAYGADE
110 120 130 140 150
VDVVFPYRAL IAGDETTGFE LVKQCKEACG DVLLKVIIET GELKEEALIK
160 170 180 190 200
KASQICIEAG ANFIKTSTGK VPVNATPEYA RMMLEVIRDM DVAKTVGFKP
210 220 230 240 250
AGGVRTAEDA QAYLAMADDI LGGDWADNMH YRFGASSLLT NLLNTLEVTE

ETADPSAY
Length:258
Mass (Da):27,724
Last modified:March 15, 2005 - v1
Checksum:iC988C2CEB8EBFD0D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000020 Genomic DNA Translation: AAW84999.1
RefSeqiWP_005417709.1, NC_006840.2
YP_203887.1, NC_006840.2

Genome annotation databases

EnsemblBacteriaiAAW84999; AAW84999; VF_0504
GeneIDi3278018
KEGGivfi:VF_0504
PATRICifig|312309.11.peg.495

Similar proteinsi

Entry informationi

Entry nameiDEOC_VIBF1
AccessioniPrimary (citable) accession number: Q5E7J7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 26, 2008
Last sequence update: March 15, 2005
Last modified: March 28, 2018
This is version 77 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health