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Q5E7J4

- DEOD1_VIBF1

UniProt

Q5E7J4 - DEOD1_VIBF1

Protein

Purine nucleoside phosphorylase DeoD-type 1

Gene

deoD1

Organism
Vibrio fischeri (strain ATCC 700601 / ES114)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 59 (01 Oct 2014)
      Sequence version 1 (15 Mar 2005)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Purine nucleoside + phosphate = purine + alpha-D-ribose 1-phosphate.UniRule annotation
    Purine deoxynucleoside + phosphate = purine + 2'-deoxy-alpha-D-ribose 1-phosphate.UniRule annotation

    GO - Molecular functioni

    1. purine-nucleoside phosphorylase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. purine nucleoside metabolic process Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Glycosyltransferase, Transferase

    Enzyme and pathway databases

    BioCyciAFIS312309:GIWP-525-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Purine nucleoside phosphorylase DeoD-type 1UniRule annotation (EC:2.4.2.1UniRule annotation)
    Short name:
    PNP 1UniRule annotation
    Gene namesi
    Name:deoD1UniRule annotation
    Ordered Locus Names:VF_0507
    OrganismiVibrio fischeri (strain ATCC 700601 / ES114)
    Taxonomic identifieri312309 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio
    ProteomesiUP000000537: Chromosome I

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 238238Purine nucleoside phosphorylase DeoD-type 1PRO_0000063171Add
    BLAST

    Proteomic databases

    PRIDEiQ5E7J4.

    Interactioni

    Subunit structurei

    Homohexamer.UniRule annotation

    Protein-protein interaction databases

    STRINGi312309.VF_0507.

    Structurei

    3D structure databases

    ProteinModelPortaliQ5E7J4.
    SMRiQ5E7J4. Positions 2-238.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the PNP/UDP phosphorylase family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0813.
    HOGENOMiHOG000274896.
    KOiK03784.
    OMAiNATYAGK.
    OrthoDBiEOG6BKJC5.

    Family and domain databases

    Gene3Di3.40.50.1580. 1 hit.
    HAMAPiMF_01627. Pur_nucleosid_phosp.
    InterProiIPR004402. DeoD-type.
    IPR018017. Nucleoside_phosphorylase.
    IPR018016. Nucleoside_phosphorylase_CS.
    IPR000845. Nucleoside_phosphorylase_d.
    [Graphical view]
    PANTHERiPTHR21234. PTHR21234. 1 hit.
    PfamiPF01048. PNP_UDP_1. 1 hit.
    [Graphical view]
    SUPFAMiSSF53167. SSF53167. 1 hit.
    TIGRFAMsiTIGR00107. deoD. 1 hit.
    PROSITEiPS01232. PNP_UDP_1. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q5E7J4-1 [UniParc]FASTAAdd to Basket

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    MATPHINAEM GDFADVVLMP GDPIRAKYIA ETFLDDVVQV CDVRNMYGFT    50
    GTYKGRKISV MGHGMGIPSC SIYMTELIKD FGVKKVIRVG SCGAVNEGIK 100
    VRDVVIGMGA CTDSKVNRIR FKDHDFAAIA DYEMVRNAEL AAQARGIDVK 150
    VGNLFSAELF YTPDPSMFDL MDKYGIVGVE MEAAGMYGVA AEYGAKALAI 200
    CTVSDHIKTG EQTTSDERAT TFDEMMLIAL DSVLLGDK 238
    Length:238
    Mass (Da):25,859
    Last modified:March 15, 2005 - v1
    Checksum:iFD4CB2AFF1898216
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000020 Genomic DNA. Translation: AAW85002.1.
    RefSeqiYP_203890.1. NC_006840.2.

    Genome annotation databases

    EnsemblBacteriaiAAW85002; AAW85002; VF_0507.
    GeneIDi3278168.
    KEGGivfi:VF_0507.
    PATRICi20111526. VBIVibFis127983_0498.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP000020 Genomic DNA. Translation: AAW85002.1 .
    RefSeqi YP_203890.1. NC_006840.2.

    3D structure databases

    ProteinModelPortali Q5E7J4.
    SMRi Q5E7J4. Positions 2-238.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 312309.VF_0507.

    Proteomic databases

    PRIDEi Q5E7J4.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAW85002 ; AAW85002 ; VF_0507 .
    GeneIDi 3278168.
    KEGGi vfi:VF_0507.
    PATRICi 20111526. VBIVibFis127983_0498.

    Phylogenomic databases

    eggNOGi COG0813.
    HOGENOMi HOG000274896.
    KOi K03784.
    OMAi NATYAGK.
    OrthoDBi EOG6BKJC5.

    Enzyme and pathway databases

    BioCyci AFIS312309:GIWP-525-MONOMER.

    Family and domain databases

    Gene3Di 3.40.50.1580. 1 hit.
    HAMAPi MF_01627. Pur_nucleosid_phosp.
    InterProi IPR004402. DeoD-type.
    IPR018017. Nucleoside_phosphorylase.
    IPR018016. Nucleoside_phosphorylase_CS.
    IPR000845. Nucleoside_phosphorylase_d.
    [Graphical view ]
    PANTHERi PTHR21234. PTHR21234. 1 hit.
    Pfami PF01048. PNP_UDP_1. 1 hit.
    [Graphical view ]
    SUPFAMi SSF53167. SSF53167. 1 hit.
    TIGRFAMsi TIGR00107. deoD. 1 hit.
    PROSITEi PS01232. PNP_UDP_1. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 700601 / ES114.

    Entry informationi

    Entry nameiDEOD1_VIBF1
    AccessioniPrimary (citable) accession number: Q5E7J4
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: January 10, 2006
    Last sequence update: March 15, 2005
    Last modified: October 1, 2014
    This is version 59 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3