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Q5E7J4

- DEOD1_VIBF1

UniProt

Q5E7J4 - DEOD1_VIBF1

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Protein
Purine nucleoside phosphorylase DeoD-type 1
Gene
deoD1, VF_0507
Organism
Vibrio fischeri (strain ATCC 700601 / ES114)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

Purine nucleoside + phosphate = purine + alpha-D-ribose 1-phosphate.UniRule annotation
Purine deoxynucleoside + phosphate = purine + 2'-deoxy-alpha-D-ribose 1-phosphate.UniRule annotation

GO - Molecular functioni

  1. purine-nucleoside phosphorylase activity Source: UniProtKB-HAMAP
Complete GO annotation...

GO - Biological processi

  1. purine nucleoside metabolic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Enzyme and pathway databases

BioCyciAFIS312309:GIWP-525-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Purine nucleoside phosphorylase DeoD-type 1 (EC:2.4.2.1)
Short name:
PNP 1
Gene namesi
Name:deoD1
Ordered Locus Names:VF_0507
OrganismiVibrio fischeri (strain ATCC 700601 / ES114)
Taxonomic identifieri312309 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio
ProteomesiUP000000537: Chromosome I

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 238238Purine nucleoside phosphorylase DeoD-type 1UniRule annotation
PRO_0000063171Add
BLAST

Proteomic databases

PRIDEiQ5E7J4.

Interactioni

Subunit structurei

Homohexamer By similarity.UniRule annotation

Protein-protein interaction databases

STRINGi312309.VF_0507.

Structurei

3D structure databases

ProteinModelPortaliQ5E7J4.
SMRiQ5E7J4. Positions 2-238.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0813.
HOGENOMiHOG000274896.
KOiK03784.
OMAiNATYAGK.
OrthoDBiEOG6BKJC5.

Family and domain databases

Gene3Di3.40.50.1580. 1 hit.
HAMAPiMF_01627. Pur_nucleosid_phosp.
InterProiIPR004402. DeoD-type.
IPR018017. Nucleoside_phosphorylase.
IPR018016. Nucleoside_phosphorylase_CS.
IPR000845. Nucleoside_phosphorylase_d.
[Graphical view]
PANTHERiPTHR21234. PTHR21234. 1 hit.
PfamiPF01048. PNP_UDP_1. 1 hit.
[Graphical view]
SUPFAMiSSF53167. SSF53167. 1 hit.
TIGRFAMsiTIGR00107. deoD. 1 hit.
PROSITEiPS01232. PNP_UDP_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5E7J4-1 [UniParc]FASTAAdd to Basket

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MATPHINAEM GDFADVVLMP GDPIRAKYIA ETFLDDVVQV CDVRNMYGFT    50
GTYKGRKISV MGHGMGIPSC SIYMTELIKD FGVKKVIRVG SCGAVNEGIK 100
VRDVVIGMGA CTDSKVNRIR FKDHDFAAIA DYEMVRNAEL AAQARGIDVK 150
VGNLFSAELF YTPDPSMFDL MDKYGIVGVE MEAAGMYGVA AEYGAKALAI 200
CTVSDHIKTG EQTTSDERAT TFDEMMLIAL DSVLLGDK 238
Length:238
Mass (Da):25,859
Last modified:March 15, 2005 - v1
Checksum:iFD4CB2AFF1898216
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000020 Genomic DNA. Translation: AAW85002.1.
RefSeqiYP_203890.1. NC_006840.2.

Genome annotation databases

EnsemblBacteriaiAAW85002; AAW85002; VF_0507.
GeneIDi3278168.
KEGGivfi:VF_0507.
PATRICi20111526. VBIVibFis127983_0498.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP000020 Genomic DNA. Translation: AAW85002.1 .
RefSeqi YP_203890.1. NC_006840.2.

3D structure databases

ProteinModelPortali Q5E7J4.
SMRi Q5E7J4. Positions 2-238.
ModBasei Search...

Protein-protein interaction databases

STRINGi 312309.VF_0507.

Proteomic databases

PRIDEi Q5E7J4.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAW85002 ; AAW85002 ; VF_0507 .
GeneIDi 3278168.
KEGGi vfi:VF_0507.
PATRICi 20111526. VBIVibFis127983_0498.

Phylogenomic databases

eggNOGi COG0813.
HOGENOMi HOG000274896.
KOi K03784.
OMAi NATYAGK.
OrthoDBi EOG6BKJC5.

Enzyme and pathway databases

BioCyci AFIS312309:GIWP-525-MONOMER.

Family and domain databases

Gene3Di 3.40.50.1580. 1 hit.
HAMAPi MF_01627. Pur_nucleosid_phosp.
InterProi IPR004402. DeoD-type.
IPR018017. Nucleoside_phosphorylase.
IPR018016. Nucleoside_phosphorylase_CS.
IPR000845. Nucleoside_phosphorylase_d.
[Graphical view ]
PANTHERi PTHR21234. PTHR21234. 1 hit.
Pfami PF01048. PNP_UDP_1. 1 hit.
[Graphical view ]
SUPFAMi SSF53167. SSF53167. 1 hit.
TIGRFAMsi TIGR00107. deoD. 1 hit.
PROSITEi PS01232. PNP_UDP_1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700601 / ES114.

Entry informationi

Entry nameiDEOD1_VIBF1
AccessioniPrimary (citable) accession number: Q5E7J4
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 10, 2006
Last sequence update: March 15, 2005
Last modified: May 14, 2014
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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