Q5E6W6 (Q5E6W6_VIBF1) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Alanine racemase EMBL AAW85230.1
EC=5.1.1.1 EMBL AAW85230.1

Gene names

Ordered Locus Names:

VF_0735 EMBL AAW85230.1

Organism

Vibrio fischeri (strain ATCC 700601 / ES114) [Reference proteome] [HAMAP] EMBL AAW85230.1

Taxonomic identifier

312309 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Aliivibrio › Vibrio fischeri

Protein attributes

Sequence length	403 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-alanine = D-alanine. RuleBase RU000608 SAAS SAAS020622
Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000608 SAAS SAAS020622
Pathway	Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. SAAS SAAS020622
Sequence similarities	Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
Ligand	Pyridoxal phosphate SAAS SAAS020622 RuleBase RU000608
Molecular function	Isomerase RuleBase RU000608 SAAS SAAS020622 EMBL AAW85230.1
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	D-alanine biosynthetic process Inferred from electronic annotation. Source: UniProtKB-UniPathway
Molecular_function	alanine racemase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q5E6W6 [UniParc]. Last modified March 15, 2005. Version 1. Checksum: DD94B7C66EAD39D7	FASTA	403	44,248
	10 20 30 40 50 60 MKFTKCALAL SLALPSIANS APLLSLDTLT NQEKIQQTNA WLEIDTQAFQ NNIDTLRASL 70 80 90 100 110 120 EQDTKVCAIM KADAYGNGIE GLMASVIERN VECIGITSNE EARIVRAKGF VGELMRVRAA 130 140 150 160 170 180 SPNEIESGLQ YKIEELIGSS EQANIIAKLA KQNNTIIPVH LALNAGGMGR NGLDLSQPQG 190 200 210 220 230 240 KKEALNIAFN GHVNIVGIMT HFPNESVDEI RTKLNLFKQE SQWLIDEAQL NRDDITLHVA 250 260 270 280 290 300 NSYTTINLPE AHLDMVRPGG LLYGDMPNNP EYKRIVQFKT SVASLNYLPK GSTIGYSSTY 310 320 330 340 350 360 VLGRDSILAN LPLGYSDGYV RSIGNNGYVL INGQKANVVG VTSMNTTMVD ITDIKNVQPG 370 380 390 400 DEVVLFGKQN EFTIEAKEME AFSSRSMPEL YVIWGSTNPK IYK

References

[1]

"Complete genome sequence of Vibrio fischeri: a symbiotic bacterium with pathogenic congeners." Ruby E.G., Urbanowski M., Campbell J., Dunn A., Faini M., Gunsalus R., Lostroh P., Lupp C., McCann J., Millikan D., Schaefer A., Stabb E., Stevens A., Visick K., Whistler C., Greenberg E.P. Proc. Natl. Acad. Sci. U.S.A. 102:3004-3009(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 700601 / ES114.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000020 Genomic DNA. Translation: AAW85230.1.
RefSeq	YP_204118.1. NC_006840.2.
3D structure databases
ProteinModelPortal	Q5E6W6.
ModBase	Search...
Protein-protein interaction databases
STRING	312309.VF_0735.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAW85230; AAW85230; VF_0735.
GeneID	3277953.
KEGG	vfi:VF_0735.
PATRIC	20112014. VBIVibFis127983_0728.
Phylogenomic databases
eggNOG	COG0787.
HOGENOM	HOG000279190.
KO	K01775.
OMA	NTVGYDR.
ProtClustDB	PRK13340.
Enzyme and pathway databases
BioCyc	AFIS312309:GIWP-770-MONOMER.
UniPathway	UPA00042; UER00497.
Family and domain databases
Gene3D	2.40.37.10. 1 hit.
HAMAP	MF_01201. Ala_racemase.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. IPR020622. Ala_racemase_pyridoxalP-BS. [Graphical view]
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. alr. 1 hit.
PROSITE	PS00395. ALANINE_RACEMASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q5E6W6_VIBF1

Accession

Primary (citable) accession number: Q5E6W6

Entry history

Integrated into UniProtKB/TrEMBL:	March 15, 2005
Last sequence update:	March 15, 2005
Last modified:	May 1, 2013
This is version 65 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)