Q5E6F9 (Q5E6F9_VIBF1) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Glutamate decarboxylase EMBL AAW85387.1
EC=4.1.1.15 EMBL AAW85387.1

Gene names

Ordered Locus Names:

VF_0892 EMBL AAW85387.1

Organism

Vibrio fischeri (strain ATCC 700601 / ES114) [Reference proteome] [HAMAP] EMBL AAW85387.1

Taxonomic identifier

312309 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Aliivibrio › Vibrio fischeri

Protein attributes

Sequence length	547 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000382
Sequence similarities	Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000382
Molecular function	Lyase RuleBase RU000382 EMBL AAW85387.1
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	carboxylic acid metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	glutamate decarboxylase activity Inferred from electronic annotation. Source: EC pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q5E6F9 [UniParc]. Last modified March 15, 2005. Version 1. Checksum: B089F65FD9D6844C	FASTA	547	60,953
	10 20 30 40 50 60 MVTDNKTADA SFESLLRIFT VPEAPDSTLG IIEKELSQNL NQFLREHIVA EEKPLTEIEK 70 80 90 100 110 120 DFTDSSMPES PTYVSEHTEH LLDTLVSQSV HTSAPSFIGH MTSALPYFLM PLSKIMIALN 130 140 150 160 170 180 QNLVKIETSK AFTPLERQVL GMLHRLIFGQ KDSFYQHWMH SADHSLGAFC SGGTIANITA 190 200 210 220 230 240 LWVARNRLLK PEGDFEGIAK QGLFAALMHY KCNGLAIFVS ERGHYSLKKA ADVLGIGQDG 250 260 270 280 290 300 VIAVKTDNNN RVCLDDLELK IAQAKAKNIK PLAIVGVAGT TETGSIDPLR ELANVAQREG 310 320 330 340 350 360 CHFHVDAAWG GATLMSNTYR HLLDGIDLAD SVTIDAHKQL YVPMGAGMVI FKDPELMSSI 370 380 390 400 410 420 QHHAEYILRK GSKDLGRHTL EGSRSGMAML LYSCFNVISR PGYELLINQS IEKAHYFADL 430 440 450 460 470 480 IQQQDDFELI TEPELCLLTY RYVPSNVKAA LAIATDEQKI EIYEHLDNLT KYIQKTQRET 490 500 510 520 530 540 GKSFVSRTRL TPEAYQHQPT IVFRVVLANP LTTKEILQNV LIEQREIASS SEISLPLLNQ IVGNILH

References

[1]

"Complete genome sequence of Vibrio fischeri: a symbiotic bacterium with pathogenic congeners." Ruby E.G., Urbanowski M., Campbell J., Dunn A., Faini M., Gunsalus R., Lostroh P., Lupp C., McCann J., Millikan D., Schaefer A., Stabb E., Stevens A., Visick K., Whistler C., Greenberg E.P. Proc. Natl. Acad. Sci. U.S.A. 102:3004-3009(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 700601 / ES114.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000020 Genomic DNA. Translation: AAW85387.1.
RefSeq	YP_204275.1. NC_006840.2.
3D structure databases
ProteinModelPortal	Q5E6F9.
ModBase	Search...
Protein-protein interaction databases
STRING	312309.VF_0892.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAW85387; AAW85387; VF_0892.
GeneID	3277990.
KEGG	vfi:VF_0892.
PATRIC	20112364. VBIVibFis127983_0888.
Phylogenomic databases
eggNOG	COG0076.
HOGENOM	HOG000282553.
KO	K01580.
OMA	CHFHVDA.
ProtClustDB	CLSK874231.
Enzyme and pathway databases
BioCyc	AFIS312309:GIWP-941-MONOMER.
Family and domain databases
Gene3D	3.40.640.10. 1 hit. 3.90.1150.10. 1 hit.
InterPro	IPR022517. Asp_decarboxylase_pyridox. IPR002129. PyrdxlP-dep_de-COase. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. [Graphical view]
Pfam	PF00282. Pyridoxal_deC. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q5E6F9_VIBF1

Accession

Primary (citable) accession number: Q5E6F9

Entry history

Integrated into UniProtKB/TrEMBL:	March 15, 2005
Last sequence update:	March 15, 2005
Last modified:	May 1, 2013
This is version 57 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)