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Q5E6D0 (Q5E6D0_VIBF1) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 59. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Superoxide dismutase RuleBase RU000414

EC=1.15.1.1 RuleBase RU000414
Gene names
Name:sodB EMBL AAW85416.1
Ordered Locus Names:VF_0921 EMBL AAW85416.1
OrganismVibrio fischeri (strain ATCC 700601 / ES114) [Reference proteome] [HAMAP] EMBL AAW85416.1
Taxonomic identifier312309 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaVibrionalesVibrionaceaeAliivibrio

Protein attributes

Sequence length194 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Destroys radicals which are normally produced within the cells and which are toxic to biological systems By similarity.

Catalytic activity

2 superoxide + 2 H+ = O2 + H2O2.

Sequence similarities

Belongs to the iron/manganese superoxide dismutase family. RuleBase RU004477

Sequences

Sequence LengthMass (Da)Tools
Q5E6D0 [UniParc].

Last modified March 15, 2005. Version 1.
Checksum: 2324CFA92D72E1C7

FASTA19421,585
        10         20         30         40         50         60 
MSFELPALPY AKDALEPHIS AETLDFHHGK HHNTYVVKLN GLIPGTEFEG KTLEEIIKTS 

        70         80         90        100        110        120 
TGGVFNNAAQ IWNHTFYWHC LAPNAGGEPT GAVAEAINAA FGSFEEFKAQ FTDSAINNFG 

       130        140        150        160        170        180 
SSWTWLVKKA DGSLEIVNTS NAATPLTEEG TTPLLTVDLW EHAYYIDFRN VRPDYMGAFW 

       190 
NLVNWSFVEE NLAK 

« Hide

References

[1]"Complete genome sequence of Vibrio fischeri: a symbiotic bacterium with pathogenic congeners."
Ruby E.G., Urbanowski M., Campbell J., Dunn A., Faini M., Gunsalus R., Lostroh P., Lupp C., McCann J., Millikan D., Schaefer A., Stabb E., Stevens A., Visick K., Whistler C., Greenberg E.P.
Proc. Natl. Acad. Sci. U.S.A. 102:3004-3009(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 700601 / ES114.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP000020 Genomic DNA. Translation: AAW85416.1.
RefSeqYP_204304.1. NC_006840.2.

3D structure databases

ProteinModelPortalQ5E6D0.
SMRQ5E6D0. Positions 2-193.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING312309.VF_0921.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAW85416; AAW85416; VF_0921.
GeneID3278258.
KEGGvfi:VF_0921.
PATRIC20112426. VBIVibFis127983_0919.

Phylogenomic databases

eggNOGCOG0605.
HOGENOMHOG000013584.
KOK04564.
OMAWTWLVKG.
OrthoDBEOG63NMNT.

Enzyme and pathway databases

BioCycAFIS312309:GIWP-971-MONOMER.

Family and domain databases

InterProIPR001189. Mn/Fe_SOD.
IPR019833. Mn/Fe_SOD_BS.
IPR019832. Mn/Fe_SOD_C.
IPR019831. Mn/Fe_SOD_N.
[Graphical view]
PANTHERPTHR11404. PTHR11404. 1 hit.
PfamPF02777. Sod_Fe_C. 1 hit.
PF00081. Sod_Fe_N. 1 hit.
[Graphical view]
PIRSFPIRSF000349. SODismutase. 1 hit.
PRINTSPR01703. MNSODISMTASE.
SUPFAMSSF46609. SSF46609. 1 hit.
SSF54719. SSF54719. 1 hit.
PROSITEPS00088. SOD_MN. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ5E6D0_VIBF1
AccessionPrimary (citable) accession number: Q5E6D0
Entry history
Integrated into UniProtKB/TrEMBL: March 15, 2005
Last sequence update: March 15, 2005
Last modified: July 9, 2014
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)