Q5E6D0 (Q5E6D0_VIBF1) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Superoxide dismutase RuleBase RU000414
EC=1.15.1.1 RuleBase RU000414

Gene names

Name:	sodB EMBL AAW85416.1
Ordered Locus Names:	VF_0921 EMBL AAW85416.1

Organism

Vibrio fischeri (strain ATCC 700601 / ES114) [Reference proteome] [HAMAP] EMBL AAW85416.1

Taxonomic identifier

312309 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Vibrionales › Vibrionaceae › Aliivibrio › Vibrio fischeri

Protein attributes

Sequence length	194 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Destroys radicals which are normally produced within the cells and which are toxic to biological systems By similarity. RuleBase RU000414
Catalytic activity	2 superoxide + 2 H+ = O2 + H2O2. RuleBase RU000414
Sequence similarities	Belongs to the iron/manganese superoxide dismutase family. RuleBase RU004477

Ontologies

Keywords
Molecular function	Oxidoreductase RuleBase RU000414 EMBL AAW85416.1
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	superoxide metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	metal ion binding Inferred from electronic annotation. Source: InterPro superoxide dismutase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q5E6D0 [UniParc]. Last modified March 15, 2005. Version 1. Checksum: 2324CFA92D72E1C7	FASTA	194	21,585
	10 20 30 40 50 60 MSFELPALPY AKDALEPHIS AETLDFHHGK HHNTYVVKLN GLIPGTEFEG KTLEEIIKTS 70 80 90 100 110 120 TGGVFNNAAQ IWNHTFYWHC LAPNAGGEPT GAVAEAINAA FGSFEEFKAQ FTDSAINNFG 130 140 150 160 170 180 SSWTWLVKKA DGSLEIVNTS NAATPLTEEG TTPLLTVDLW EHAYYIDFRN VRPDYMGAFW 190 NLVNWSFVEE NLAK

References

[1]

"Complete genome sequence of Vibrio fischeri: a symbiotic bacterium with pathogenic congeners." Ruby E.G., Urbanowski M., Campbell J., Dunn A., Faini M., Gunsalus R., Lostroh P., Lupp C., McCann J., Millikan D., Schaefer A., Stabb E., Stevens A., Visick K., Whistler C., Greenberg E.P. Proc. Natl. Acad. Sci. U.S.A. 102:3004-3009(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 700601 / ES114.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP000020 Genomic DNA. Translation: AAW85416.1.
RefSeq	YP_204304.1. NC_006840.2.
3D structure databases
ProteinModelPortal	Q5E6D0.
SMR	Q5E6D0. Positions 2-193.
ModBase	Search...
Protein-protein interaction databases
STRING	312309.VF_0921.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAW85416; AAW85416; VF_0921.
GeneID	3278258.
KEGG	vfi:VF_0921.
PATRIC	20112426. VBIVibFis127983_0919.
Phylogenomic databases
eggNOG	COG0605.
HOGENOM	HOG000013584.
KO	K04564.
OMA	VEAFWNV.
ProtClustDB	CLSK874652.
Enzyme and pathway databases
BioCyc	AFIS312309:GIWP-971-MONOMER.
Family and domain databases
InterPro	IPR001189. Mn/Fe_SOD. IPR019833. Mn/Fe_SOD_BS. IPR019832. Mn/Fe_SOD_C. IPR019831. Mn/Fe_SOD_N. [Graphical view]
PANTHER	PTHR11404. PTHR11404. 1 hit.
Pfam	PF02777. Sod_Fe_C. 1 hit. PF00081. Sod_Fe_N. 1 hit. [Graphical view]
PIRSF	PIRSF000349. SODismutase. 1 hit.
PRINTS	PR01703. MNSODISMTASE.
SUPFAM	SSF46609. SODismutase. 1 hit. SSF54719. SODismutase. 1 hit.
PROSITE	PS00088. SOD_MN. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q5E6D0_VIBF1

Accession

Primary (citable) accession number: Q5E6D0

Entry history

Integrated into UniProtKB/TrEMBL:	March 15, 2005
Last sequence update:	March 15, 2005
Last modified:	May 1, 2013
This is version 55 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)